PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917154.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 678aa    MW: 74255.6 Da    PI: 5.6945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917154.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08563611348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010917154.1 563 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 611
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485556615IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-13558619IPR009057Homeodomain-like
SMARTSM007176.9E-9560613IPR001005SANT/Myb domain
CDDcd116605.94E-18562612No hitNo description
SuperFamilySSF466896.32E-16562621IPR009057Homeodomain-like
PfamPF002491.1E-6563611IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGTVVDIQVD GEKETEESDF GKAGVELSTG TAVDGEKDTE ESDFQKSGFG KIVASDPVVY  60
QLVRVEGDGR LVPATDDEVM EVEHLLEEDK SGLASDEATK YFDGCVSNEG LPSKTSDFEG  120
LSQAKNAEVD SQELNARLEE ERLRLSSESL NHCTKCMDAN HQTLDGCNGT QACKHKLQPE  180
NTSMETAPSS MALNGSQSVQ LEGAETHSGP ANEAVISSST VSGTCTSSMP DFSILKGEIC  240
LDNLSIRELQ EAFRATFGRQ TSVKDKLWLK RRITMGLTNS CDVPTTSFVI KDHKIVLKEV  300
KEEPSKLQKS KTEAGSLPSD QVTDPTDGNF HNLPTSLTNQ TEDQQVSGKR LGKPLSEYDE  360
KNEDLQMEQF ASKRVRKPTR RYIEELSEFE TRECSARLLS SVKNSGHGQS SPKSQIRPVH  420
DIGSCGTSFS TRLDSLGGFG IQVPYVSRVR RGRPRKNFVS LMKYHPGGIA PNLVKTALGI  480
PALQQNSEGG SRVKKARAPP MHITQLLQNF VDEREKRDAE TIYGDDEHDL GLEEFDAAGD  540
NVDGNADTEP ASKGGVRRKH HRAWTLGEVL KLVEGVARYG AGRWSEIRRL AFASYSYRTS  600
VDLKDKWRNL LRASLAQGPS DKGAKNSRKH TSVPIPTPIL SRVRELAEMH SQTSTELGPS  660
KISGCGGRNV QEEGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449455RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119397.10.0uncharacterized protein LOC105041815 isoform X3
TrEMBLA0A2H3ZMT60.0A0A2H3ZMT6_PHODC; uncharacterized protein LOC103704887 isoform X4
STRINGXP_008786580.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-106TRF-like 6