PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 682aa MW: 74758.3 Da PI: 5.6972 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 567 | 615 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v+++G g+W+ I r Rt ++k++w+++l XP_010917152.1 567 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 615 7***************************999**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 560 | 619 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-13 | 562 | 623 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-9 | 564 | 617 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.63E-18 | 566 | 616 | No hit | No description |
SuperFamily | SSF46689 | 6.32E-16 | 566 | 625 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-6 | 567 | 615 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MGTVVDIQVD GEKETEESDF GKAGVELSTG TAVDGEKDTE ESDFQKSGFG KIVASDPVEG 60 DGRLVPATDD EVMEVEHLLE EDKSGLASDE ATKYFDGCVS NEGLPSKTSD FEGLSQAKNA 120 EVDSQELNAR LEYIEVMLQK VKQEERLRLS SESLNHCTKC MDANHQTLDG CNGTQACKHK 180 LQPENTSMET APSSMALNGS QSVQLEGAET HSGPANEAVI SSSTVSGTCT SSMPDFSILK 240 GEICLDNLSI RELQEAFRAT FGRQTSVKDK LWLKRRITMG LTNSCDVPTT SFVIKDHKIV 300 LKEVKEEPSK LQKSKTEAGS LPSDQVTDPT DGNFHNLPTS LTNQTEDQQV SGKRLGKPLS 360 EYDEKNEDLQ MEQFASKRVR KPTRRYIEEL SEFETRECSA RLLSSVKNSG HGQSSPKSQI 420 RPVHDIGSCG TSFSTRLDSL GGFGIQVPYV SRVRRGRPRK NFVSLMKYHP GGIAPNLVKT 480 ALGIPALQQN SEGGSRVKKA RAPPMHITQL LQNFVDEREK RDAETIYGDD EHDLGLEEFD 540 AAGDNVDGNA DTEPASKGGV RRKHHRAWTL GEVLKLVEGV ARYGAGRWSE IRRLAFASYS 600 YRTSVDLKDK WRNLLRASLA QGPSDKGAKN SRKHTSVPIP TPILSRVREL AEMHSQTSTE 660 LGPSKISGCG GRNVQEEGSG FL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 453 | 459 | RRGRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917150.1 | 0.0 | uncharacterized protein LOC105041815 isoform X4 | ||||
Refseq | XP_029119394.1 | 0.0 | uncharacterized protein LOC105041815 isoform X1 | ||||
TrEMBL | A0A2H3ZMV8 | 0.0 | A0A2H3ZMV8_PHODC; uncharacterized protein LOC103704887 isoform X2 | ||||
STRING | XP_008786580.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-110 | TRF-like 6 |