PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917151.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 687aa    MW: 75375 Da    PI: 5.8061
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917151.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08572620348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E ++lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_010917151.1 572 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 620
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485565624IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-13567628IPR009057Homeodomain-like
SMARTSM007176.9E-9569622IPR001005SANT/Myb domain
SuperFamilySSF466896.4E-16571630IPR009057Homeodomain-like
CDDcd116606.73E-18571621No hitNo description
PfamPF002491.2E-6572620IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGTVVDIQVD GEKETEESDF GKAGVELSTG TAVDGEKDTE ESDFQKSGFG KIVASDPVVY  60
QLVRVEGDGR LVPATDDEVM EVEHLLEEDK SGLASDEATK YFDGCVSNEG LPSKTSDFEG  120
LSQAKNAEVD SQELNARLEY IEVMLQKVKQ EERLRLSSES LNHCTKCMDA NHQTLDGCNG  180
TQACKHKLQP ENTSMETAPS SMALNGSQSV QLEGAETHSG PANEAVISSS TVSGTCTSSM  240
PDFSILKGEI CLDNLSIREL QEAFRATFGR QTSVKDKLWL KRRITMGLTN SCDVPTTSFV  300
IKDHKIVLKE VKEEPSKLQK SKTEAGSLPS DQVTDPTDGN FHNLPTSLTN QTEDQQVSGK  360
RLGKPLSEYD EKNEDLQMEQ FASKRVRKPT RRYIEELSEF ETRECSARLL SSVKNSGHGQ  420
SSPKSQIRPV HDIGSCGTSF STRLDSLGGF GIQVPYVSRV RRGRPRKNFV SLMKYHPGGI  480
APNLVKTALG IPALQQNSEG GSRVKKARAP PMHITQLNFV DEREKRDAET IYGDDEHDLG  540
LEEFDAAGDN VDGNADTEPA SKGGVRRKHH RAWTLGEVLK LVEGVARYGA GRWSEIRRLA  600
FASYSYRTSV DLKDKWRNLL RASLAQGPSD KGAKNSRKHT SVPIPTPILS RVRELAEMHS  660
QTSTELGPSK ISGCGGRNVQ EEGSGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460466RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119395.10.0uncharacterized protein LOC105041815 isoform X2
TrEMBLA0A2H3ZMV80.0A0A2H3ZMV8_PHODC; uncharacterized protein LOC103704887 isoform X2
STRINGXP_008786580.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-114TRF-like 6