PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 689aa MW: 75616.3 Da PI: 5.8061 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 574 | 622 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v+++G g+W+ I r Rt ++k++w+++l XP_010917150.1 574 AWTLGEVLKLVEGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 622 7***************************999**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 567 | 626 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-13 | 569 | 630 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-9 | 571 | 624 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.63E-18 | 573 | 623 | No hit | No description |
SuperFamily | SSF46689 | 6.4E-16 | 573 | 632 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 574 | 622 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MGTVVDIQVD GEKETEESDF GKAGVELSTG TAVDGEKDTE ESDFQKSGFG KIVASDPVVY 60 QLVRVEGDGR LVPATDDEVM EVEHLLEEDK SGLASDEATK YFDGCVSNEG LPSKTSDFEG 120 LSQAKNAEVD SQELNARLEY IEVMLQKVKQ EERLRLSSES LNHCTKCMDA NHQTLDGCNG 180 TQACKHKLQP ENTSMETAPS SMALNGSQSV QLEGAETHSG PANEAVISSS TVSGTCTSSM 240 PDFSILKGEI CLDNLSIREL QEAFRATFGR QTSVKDKLWL KRRITMGLTN SCDVPTTSFV 300 IKDHKIVLKE VKEEPSKLQK SKTEAGSLPS DQVTDPTDGN FHNLPTSLTN QTEDQQVSGK 360 RLGKPLSEYD EKNEDLQMEQ FASKRVRKPT RRYIEELSEF ETRECSARLL SSVKNSGHGQ 420 SSPKSQIRPV HDIGSCGTSF STRLDSLGGF GIQVPYVSRV RRGRPRKNFV SLMKYHPGGI 480 APNLVKTALG IPALQQNSEG GSRVKKARAP PMHITQLLQN FVDEREKRDA ETIYGDDEHD 540 LGLEEFDAAG DNVDGNADTE PASKGGVRRK HHRAWTLGEV LKLVEGVARY GAGRWSEIRR 600 LAFASYSYRT SVDLKDKWRN LLRASLAQGP SDKGAKNSRK HTSVPIPTPI LSRVRELAEM 660 HSQTSTELGP SKISGCGGRN VQEEGSGFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 460 | 466 | RRGRPRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917150.1 | 0.0 | uncharacterized protein LOC105041815 isoform X4 | ||||
TrEMBL | A0A2H3ZMV8 | 0.0 | A0A2H3ZMV8_PHODC; uncharacterized protein LOC103704887 isoform X2 | ||||
STRING | XP_008786580.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-115 | TRF-like 6 |