PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917079.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 332aa MW: 37874.5 Da PI: 6.7881

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917079.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.4e-54	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv + ++++ ++i evd+yk+ePwdLp k++++ek+ yfF+ rd+ky+tg ++nrat++gyWkatgkdke+++ XP_010917079.1 17 LPPGFRFHPTDEELITYYLYQKVMDASFNA-RAIGEVDLYKSEPWDLPFKARTGEKSGYFFCLRDRKYPTGLKTNRATEAGYWKATGKDKEIHQ- 109 79*************************9.89***********9999999999*******************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ l+g++ktLvfy+grapkge+t+W+mheyrle XP_010917079.1 110 RKFLIGMRKTLVFYRGRAPKGERTNWIMHEYRLE 143 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-60	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	17	167	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEHGALVLSE GDDDMELPPG FRFHPTDEEL ITYYLYQKVM DASFNARAIG EVDLYKSEPW 60 DLPFKARTGE KSGYFFCLRD RKYPTGLKTN RATEAGYWKA TGKDKEIHQR KFLIGMRKTL 120 VFYRGRAPKG ERTNWIMHEY RLEREDSVYN LSRTTMNEWV ICKVFHKNSG EKKDTELVGM 180 GSRFEDGLYS TLLGPWMNDS NRSKNKASSA SVSTHVTCFS DAFEGDMSHV ELLQNCYNFA 240 CLSTSNSSKP SLQHFEVSLP GSLNTTHGAS QNLGASLVQL LENNGHRREK SFEMERENSI 300 AGLTNNYMDV HLFACQEYPN ASARPLHLDG CF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	15	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	15	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	15	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	15	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	15	173	18	174	NAC domain-containing protein 19
3swm_B	3e-53	15	173	18	174	NAC domain-containing protein 19
3swm_C	3e-53	15	173	18	174	NAC domain-containing protein 19
3swm_D	3e-53	15	173	18	174	NAC domain-containing protein 19
3swp_A	3e-53	15	173	18	174	NAC domain-containing protein 19
3swp_B	3e-53	15	173	18	174	NAC domain-containing protein 19
3swp_C	3e-53	15	173	18	174	NAC domain-containing protein 19
3swp_D	3e-53	15	173	18	174	NAC domain-containing protein 19
4dul_A	2e-53	15	173	15	171	NAC domain-containing protein 19
4dul_B	2e-53	15	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917080.1	0.0	NAC domain-containing protein 79
Refseq	XP_010917082.1	0.0	NAC domain-containing protein 79
TrEMBL	A0A2H3X4T0	0.0	A0A2H3X4T0_PHODC; NAC domain-containing protein 79-like isoform X1
STRING	XP_008778339.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	3e-98	NAC domain containing protein 80