PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917065.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 402aa    MW: 43959.4 Da    PI: 6.6217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917065.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-16126171147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010917065.1 126 RGHWRPAEDSKLRELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 171
                      899*****************************.***********996 PP
2Myb_DNA-binding56.18.2e-18178221146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_010917065.1 178 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 221
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.42121172IPR017930Myb domain
SMARTSM007174.1E-14125174IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28126219IPR009057Homeodomain-like
PfamPF002494.3E-16126171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-26127179IPR009057Homeodomain-like
CDDcd001675.44E-13129170No hitNo description
PROSITE profilePS5129426.953173227IPR017930Myb domain
SMARTSM007179.7E-15177225IPR001005SANT/Myb domain
PfamPF002491.9E-14178220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-21180226IPR009057Homeodomain-like
CDDcd001676.58E-12180220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MALKQCNGSQ GLRSFPPSPS PSTGLFAEMG SLSINPTSSV GSNCSNKGSE KTFWTSSFMR  60
NYIGLEDHPP QNSEDEGGKC SDATDGFGEN HINAIGEESP EGENTNEGSL AVKEAADCGQ  120
SKLCARGHWR PAEDSKLREL VALHGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRSA  180
FTEEEEEKLM AAHRLYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SNAYRRRKLS  240
QGVHRRLEDA AATSLTCGFN TNLHLPFTHL SLAMGGSNGS YHITTDGGGE DGFCSDQAPY  300
DFLSGIKGQG KTRSFHSTNN WRWDGPRDES FMCSYSQHPF MVGMQQPSYP SHISDCSAAS  360
AASGASATES SSSSSFKENG ENGQFEATTS PPFIDFLGVG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-331262267107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917065.10.0transcription factor CSA
TrEMBLA0A2H3YZI70.0A0A2H3YZI7_PHODC; transcription factor CSA isoform X1
STRINGXP_008806024.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-73myb domain protein 105