PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917044.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 386aa MW: 43677.6 Da PI: 7.5238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917044.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+e+k+l + + i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_010917044.1 14 MLPGFRFHPTDEELVGFYLKRKIEQKPLAI-QLIRQLDIYKYDPWDLPKLAMTGEKEWYFYCPRDRKYRNSPRPNRVTGAGFWKATGTDRPIYSS 107 579**********************999.89***********8777899***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg ktdW+mhe+rl XP_010917044.1 108 dGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-57	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.362	14	172	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDENGEIDQL EEVMLPGFRF HPTDEELVGF YLKRKIEQKP LAIQLIRQLD IYKYDPWDLP 60 KLAMTGEKEW YFYCPRDRKY RNSPRPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSLFDSSPA NRPFSKNIPA NDQWAICRIF KKTSSVARKA 180 LPQSLPSSLP KIDDANQFAF ENSTCMNQFG SNNGLQLQQQ QRNITHHLDA SSYGTSKNSY 240 RHSLPPISSE EIPANFMFSP VELSVQNKRL LKVASMIHNI SPTMFTDVEK ASLNIDFGQP 300 KNCDGVGTDL PLEVVQHLGS GEEEGSMKVI ANTSFAANDH LETMHAISFP LGLLPKLSDE 360 GKTNLQWVSS LCANEMLSYP TNECYT

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDENGEIDQL EEVMLPGFRF HPTDEELVGF YLKRKIEQKP LAIQLIRQLD IYKYDPWDLP  60
KLAMTGEKEW YFYCPRDRKY RNSPRPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPSLFDSSPA NRPFSKNIPA NDQWAICRIF KKTSSVARKA  180
LPQSLPSSLP KIDDANQFAF ENSTCMNQFG SNNGLQLQQQ QRNITHHLDA SSYGTSKNSY  240
RHSLPPISSE EIPANFMFSP VELSVQNKRL LKVASMIHNI SPTMFTDVEK ASLNIDFGQP  300
KNCDGVGTDL PLEVVQHLGS GEEEGSMKVI ANTSFAANDH LETMHAISFP LGLLPKLSDE  360
GKTNLQWVSS LCANEMLSYP TNECYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-56	6	178	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-56	6	178	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-56	6	178	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-56	6	178	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-56	6	178	11	174	NAC domain-containing protein 19
3swm_B	9e-56	6	178	11	174	NAC domain-containing protein 19
3swm_C	9e-56	6	178	11	174	NAC domain-containing protein 19
3swm_D	9e-56	6	178	11	174	NAC domain-containing protein 19
3swp_A	9e-56	6	178	11	174	NAC domain-containing protein 19
3swp_B	9e-56	6	178	11	174	NAC domain-containing protein 19
3swp_C	9e-56	6	178	11	174	NAC domain-containing protein 19
3swp_D	9e-56	6	178	11	174	NAC domain-containing protein 19
4dul_A	8e-56	6	178	8	171	NAC domain-containing protein 19
4dul_B	8e-56	6	178	8	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917044.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-100	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2H3YZG9	0.0	A0A2H3YZG9_PHODC; putative NAC domain-containing protein 94
STRING	XP_008806001.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-101	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]