PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917010.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 32944 Da PI: 6.1779

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917010.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k XP_010917010.1 88 KKRRLNSEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 141 45689************************************************9 PP
2	HD-ZIP_I/II	130.9	5.1e-42	87	177	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl++eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+ XP_010917010.1 87 EKKRRLNSEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKSENDALQAQNKKLQAEI 177 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-20	78	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	83	143	IPR001356	Homeobox domain
SMART	SM00389	5.7E-18	86	147	IPR001356	Homeobox domain
Pfam	PF00046	6.0E-16	88	141	IPR001356	Homeobox domain
CDD	cd00086	9.99E-16	88	144	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-19	90	150	IPR009057	Homeodomain-like
PRINTS	PR00031	9.0E-6	114	123	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	118	141	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.0E-6	123	139	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-15	143	183	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MACNGMASSS FFPPNFMLQM QTHHEEKHPP PTSINSILPT TPCTNLQDFR GVAPMLRKRS 60 MSYSGIEACE EMNAEDDLSD DCSQAGEKKR RLNSEQVRTL EKNFELGNKL EPERKMQLAR 120 ALGLQPRQVA IWFQNRRARW KTKQLEKDYD VLKRQFEAIK SENDALQAQN KKLQAEILAL 180 KGRETSELIN LNKETEGSCS NRSENSSENN LDISRTSAIE SPLNPHQSIP LFPSIRPADI 240 DQLLQTSSRP ELQYPKIEQG VPDGSLSNLL CSMEDQSSFW PWSDHHSFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917010.1	0.0	homeobox-leucine zipper protein HOX21
Swissprot	A2XD08	1e-105	HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBL	A0A2H3YDS2	0.0	A0A2H3YDS2_PHODC; homeobox-leucine zipper protein HOX21
STRING	XP_008797128.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-90	HD-ZIP family protein