PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 473aa MW: 52675.7 Da PI: 5.404 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 34 | 78 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd+ll + v+++G +W++Ia+ + +++ qc+ rw++yl XP_010917007.1 34 SWTPEEDDLLREQVALHGIVNWTKIASQFR-DKSGRQCRRRWNSYL 78 6*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_010917007.1 84 KGGWSPEEDKLLCEAQKVYGNR-WTEIAKVVS-GRTDNAVKNRFST 127 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.591 | 27 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-26 | 31 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-14 | 31 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.80E-14 | 34 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 35 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.5E-17 | 35 | 95 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 82 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.093 | 83 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-11 | 87 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MEAAGMNSDD AVALAAAAAG TAAAPPKKDR RIVSWTPEED DLLREQVALH GIVNWTKIAS 60 QFRDKSGRQC RRRWNSYLNS DCKKGGWSPE EDKLLCEAQK VYGNRWTEIA KVVSGRTDNA 120 VKNRFSTLCK KRATNEALFK ENSGSFLNSN KRVIIQNGCI TVQTRELSIP TKQMRYNISD 180 LKESNISEQY TGNHEMKKDQ LRSPLAVLAP NCDIAGGLLT QNHVGNDSRT AVYDENKTTC 240 TFFRKDDPKV TALLQQAELL SSLAHKVNAE NTKESLDDAW KGIQDYLAQT EETEILSRKI 300 SGTEFVLDDF TDLIEDLKGT NTTGLQSLRQ SELHQNSEGT SEYSTGLAEH FETQRNEMDH 360 QTDNCSFNNN TEVNGPHKDM QLPSITTHQE EVLPPIKMPK ENDESSCNVS NSQFASPLPT 420 TPPFRSLADE ITTPEFTASE KRFLLDLIGL PSPAPSPKSS QQPTCKKALL DSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 35 | 133 | 10 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917007.1 | 0.0 | transcription factor MYB124 isoform X1 | ||||
TrEMBL | A0A2H3YE12 | 0.0 | A0A2H3YE12_PHODC; transcription factor MYB124-like | ||||
STRING | XP_008797126.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 1e-106 | MYB family protein |