PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010916993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 350aa MW: 37370.5 Da PI: 9.9677 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.4 | 2.4e-13 | 199 | 225 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykte+Cr + + G+C+yG++C++aHg+ XP_010916993.1 199 YKTEICRSWEELGFCRYGSKCQYAHGK 225 9************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-17 | 196 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-9 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.08E-10 | 198 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.028 | 198 | 226 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 199 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MTERIVYMNV GSSTGIDQTP SSGGSGSWHS FSPLNSSATR LRRFSSPTAN AFLTPAFNAC 60 AANPKSTGSP DVDPSLLRYT RPRLPLSASS SSASNSPDPH STARKRLHRL LYLRSSLSTL 120 SSSSPLSPIQ NLPAATARSP TLYKTPVKVE MEEDVLVMDG VLVPDSESGR PRSSVSEFGS 180 TGSPSSSSSA NNGGSSSLYK TEICRSWEEL GFCRYGSKCQ YAHGKEELRG TRNMRQRSEA 240 GGQSGRSVAI AGSYVYRNRF RYPPSASSSS ASAVGWTTGA IVAPAAKATT MTAEVGSTGV 300 AASTVSPRRS SSEPSFIWPP TPEEEAYINQ VLYGPSQRRR LPVFREICPE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916993.1 | 0.0 | mRNA decay activator protein ZFP36L1 | ||||
Refseq | XP_010916994.1 | 0.0 | mRNA decay activator protein ZFP36L1 | ||||
TrEMBL | A0A2H3ZC22 | 1e-155 | A0A2H3ZC22_PHODC; zinc finger CCCH domain-containing protein 9-like | ||||
STRING | XP_008811573.1 | 1e-155 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29445 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 6e-08 | C3H family protein |