PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 357aa MW: 39908.8 Da PI: 8.3021 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 138.1 | 7.2e-43 | 92 | 246 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa..seceaesss 79 a++kdrh ki T+ g+RdRR+Rls+e+a++fFdLqd+LGfd++skt++WLl+ +k+ai +lt + sece++s + XP_010916819.1 92 AVRKDRHNKILTAMGPRDRRMRLSLEVARKFFDLQDMLGFDRASKTVQWLLTTSKAAIEKLTVAsrpgdraftneshrnIE--SstSECEDVSTV 184 78**************************************************************88888888766655322..133567777777 PP TCP 80 ssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 s ++ +s + +a++ +ak+ k++++aa + n+a+e r +arararertrek+ +++ XP_010916819.1 185 SDHKGKSLHvvatsgtEAKRPSAKRAKQPRKAAFHPNIARENRTRARARARERTREKKWMSS 246 7777555559999997777777799999999999***********************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-42 | 93 | 244 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.754 | 94 | 152 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.796 | 224 | 241 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MLPFPDPQNF MERSISQVEL NPPPPKPEHS NFFFPFSPSN VNSDDLHDML STHPILPFAA 60 SMASIPQPPP STLPSNVNSI ATTTPPMRSS TAVRKDRHNK ILTAMGPRDR RMRLSLEVAR 120 KFFDLQDMLG FDRASKTVQW LLTTSKAAIE KLTVASRPGD RAFTNESHRN IESSTSECED 180 VSTVSDHKGK SLHVVATSGT EAKRPSAKRA KQPRKAAFHP NIARENRTRA RARARERTRE 240 KKWMSSAMSK DGGNQWASSS LPLVTIEEES DGHDLKSSLD LVAEVEERCS SMPNQHDKHS 300 KERAPEVPLE GGSLPISILD YGHNFMSIND TISIFQEQWD MEGTPRPWEA FNNSSIA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 240 | RARARARERTREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916819.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1-like | ||||
TrEMBL | A0A2H3XDX1 | 1e-108 | A0A2H3XDX1_PHODC; transcription factor TEOSINTE BRANCHED 1-like | ||||
STRING | XP_008782352.1 | 1e-109 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 7e-26 | TCP domain protein 12 |