PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916576.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YC

Protein Properties

Length: 235aa MW: 25751.7 Da PI: 4.6183

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916576.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	39.9	8.9e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ fdfl+d+v + XP_010916576.1 1 MQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTVNSLHLKQCVKSYSAFDFLTDVVNK 69 899***************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.3E-19	1	71	IPR009072	Histone-fold
Pfam	PF00808	1.7E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.8E-18	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MQADEDVGKI ALAVPLLVSK ALELFLQDLC DRTYEVTLQR GAKTVNSLHL KQCVKSYSAF 60 DFLTDVVNKV PNLGGTEPYG DEKGISRRRK TLPHDGDVET NQELRSPKLA MRSANIGPRG 120 RGRGRGRGRG RPRTRGIGCV KYEDDNDMFH ELGDLSREID GEEKPLSGKE DMAQSADPPC 180 NSASVMGATS TAEAKQEGCS AWPLPDVVAN IGIEPSSLVQ LNMQIDEDED YDNED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-14	1	54	21	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	90	SRRRKT
2	120	129	RGRGRGRGRG
3	124	134	RGRGRGRPRTR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916575.1	1e-174	dr1-associated corepressor isoform X1
TrEMBL	A0A2H3YQC1	1e-124	A0A2H3YQC1_PHODC; dr1-associated corepressor-like
STRING	XP_008802064.1	1e-124	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-41	nuclear factor Y, subunit C11