PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 252aa MW: 27764.3 Da PI: 5.5 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.9 | 5.2e-19 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ fdfl+d+v + XP_010916575.1 7 TRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTVNSLHLKQCVKSYSAFDFLTDVVNK 86 579**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.11E-20 | 3 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TVNSLHLKQC VKSYSAFDFL TDVVNKVPNL GGTEPYGDEK GISRRRKTLP HDGDVETNQE 120 LRSPKLAMRS ANIGPRGRGR GRGRGRGRPR TRGIGCVKYE DDNDMFHELG DLSREIDGEE 180 KPLSGKEDMA QSADPPCNSA SVMGATSTAE AKQEGCSAWP LPDVVANIGI EPSSLVQLNM 240 QIDEDEDYDN ED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-22 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 107 | SRRRKT |
2 | 137 | 146 | RGRGRGRGRG |
3 | 141 | 151 | RGRGRGRPRTR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916575.1 | 0.0 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | A0A2H3YQC1 | 1e-136 | A0A2H3YQC1_PHODC; dr1-associated corepressor-like | ||||
STRING | XP_008802064.1 | 1e-137 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-53 | nuclear factor Y, subunit C11 |