PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916479.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family RAV
Protein Properties Length: 349aa    MW: 38341.5 Da    PI: 9.8197
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916479.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-1255103155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  + +Aa+a++ a+++++g
  XP_010916479.1  55 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFADEADAARAYDVAAQRFRG 103
                     78****9888.8*********3.....5**********99*************98 PP
2B395.63.4e-30179278196
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kv tpsdv+k++rlv+pk++ae++      +     ++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F +++  e
  XP_010916479.1 179 FDKVVTPSDVGKLNRLVIPKQHAEKNfplkigS-G-SAGMLLNFEDVIGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVSFWRSRGPE 271
                     89***************************9743.3.3689************************************************9887777 PP

                     E..EEEE CS
              B3  90 felvvkv 96 
                     ++l++ +
  XP_010916479.1 272 KQLYIDW 278
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.15E-2355110No hitNo description
SuperFamilySSF541719.81E-1755111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-2056111IPR001471AP2/ERF domain
PfamPF008475.0E-756103IPR001471AP2/ERF domain
PROSITE profilePS5103219.75756111IPR001471AP2/ERF domain
SMARTSM003805.1E-2956117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-40170285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-31175279IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-28178272No hitNo description
PROSITE profilePS5086313.578179280IPR003340B3 DNA binding domain
PfamPF023625.3E-27179278IPR003340B3 DNA binding domain
SMARTSM010192.1E-26179282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDGSCVEELS NESGKRPPPA AAAPLYRMGS GACSVVLDPT TESGVEAESR KLPSSQYKGV  60
VPQPNGRWGA QIYEKHQRVW LGTFADEADA ARAYDVAAQR FRGRDAVTNF TPLSENDDDG  120
AAELGFLAAH SKAEIVDMLR KHTYCDELRQ SKRAGNASGS IVGKRSPPSS SVSDREILFD  180
KVVTPSDVGK LNRLVIPKQH AEKNFPLKIG SGSAGMLLNF EDVIGKVWRF RYSYWNSSQS  240
YVLTKGWSRF VKEKSLKAGD VVSFWRSRGP EKQLYIDWKP RAAAAAAFAV RPVGHVQVVR  300
LFGVNIFRTP VGCGAAAGNG CGDREGKRVR EMELFPPEQF VKKQCIRAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5217628411120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916479.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822801e-135RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A2H3YIN70.0A0A2H3YIN7_PHODC; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGXP_008799316.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-121related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]