PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916475.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 356aa    MW: 38762.1 Da    PI: 7.5718
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916475.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.6e-33178233156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  XP_010916475.1 178 KARRCWSPELHRRFVHALQQLGGSHAATPKQIREMMKVDGLTNDEVKSHLQKYRLH 233
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.975175235IPR017930Myb domain
SuperFamilySSF466895.73E-18176236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-29176236IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26178233IPR006447Myb domain, plants
PfamPF002495.0E-8180231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDLEERARRC QEYVEALEEE RRKIQVFQRE LPLCLQLVNQ AIESIRMQMG SSEETVTDEP  60
VLEEFIPLKP TSSSIEEEKG GSMEINQERS DKKPDWLRSV QLWNQDPDLS LPKAEPPKKP  120
IAVNAKKIGG AFRPFDREKH VPAPVPSAAA PASSTTVGGD GDGEKEKDKE GQSQSHRKAR  180
RCWSPELHRR FVHALQQLGG SHAATPKQIR EMMKVDGLTN DEVKSHLQKY RLHTRRPSSA  240
VQNSSTSSPP TPQFVVVGGI WVPPPDYAAA AAAAQPTDGA GASPSGIYAP VASLPSDSRC  300
QQQQGKKQSQ RSPTGPLHSE GRCSGDDNSS RKDGAANSAS PTSSSSSQTT TASPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14178231154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14178231154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14178231154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14178231154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916475.10.0transcription factor NIGT1
SwissprotQ6Z8691e-97NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A2H3YJ600.0A0A2H3YJ60_PHODC; transcription factor NIGT1-like isoform X1
STRINGXP_008799311.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.13e-86G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]