PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916463.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 315aa    MW: 34468.1 Da    PI: 8.4844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916463.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14119166355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ Er+RRd+i+ ++  L+el+P++      Kl+ a++L +A+ Y+ksLq
  XP_010916463.1 119 EMHNQTERKRRDKIKAKLKALQELIPNS-----HKLDRASMLDEAIAYMKSLQ 166
                     68*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-17113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.679116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-12119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-15119170No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17120173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-15122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMNRSSSPWG LSEVGEDDDD AAPRQPSAVN VSSEMDYFAE ILGPLSPVGD VHLSLRTTAT  60
LGVVGVGEEV ESSGGFEKGS SSRTKSDAMG LEDPRRCPSQ EVERKREVSR RSKRNRTSEM  120
HNQTERKRRD KIKAKLKALQ ELIPNSHKLD RASMLDEAIA YMKSLQQQIQ IMSRGAVCHA  180
QSMSPAAVRC LRTPQFPPFS PSGPYNAMSL GFGMAMTNIA CSIRPPLLSS LTPLEATSLV  240
PMPTLNPIPH YRSPRRVHYI PFTSSPEFPA SVVMQATRNQ SLQAESFGSM NQAETGCQGM  300
QSVIADSLQI SAITQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRD
2125130RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916461.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X3
TrEMBLA0A3Q0IFJ56e-93A0A3Q0IFJ5_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
STRINGXP_008809179.11e-171(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-21phytochrome interacting factor 3