PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 35046.3 Da PI: 6.9284 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl XP_010916405.1 19 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 66 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_010916405.1 72 RGNLSPEEQFLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 115 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.96 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.98E-31 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.42E-12 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 24.802 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 72 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 74 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.37E-12 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSEKRGSNKY EEDKVDLRRG PWTLEEDTLL IHYIACHGEG RWNLLAKCSG LKRTGKSCRL 60 RWLNYLKPDI KRGNLSPEEQ FLILELHSKW GNRWSRIAQH LPGRTDNEIK NYWRTRVQKQ 120 ARQLKIDANS AMFRDAIRCY WMPRLLEKMG SSQSMPSLTD SNATTTAGTM EQMITPHGPP 180 QPFSNPAMHY YYPFEGCSSY DPPGSENHSP TTSSASMPLP QLPNLSEFSS GPPDNYSGAS 240 FNPFTSGHCV DNSYGLDAMD LDPVSATQLG FSVSDYTMGN NNCVDNLGDG LWNMNELWYV 300 RKLNEWGGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 16 | 121 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916405.1 | 0.0 | transcription factor MYB62 | ||||
TrEMBL | A0A2H3YEZ4 | 0.0 | A0A2H3YEZ4_PHODC; transcription factor MYB62-like | ||||
STRING | XP_008797802.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 6e-81 | myb domain protein 62 |