PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 265aa MW: 28118.2 Da PI: 8.2169 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.8 | 4.7e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+++p++ p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ l+q+ XP_010916372.1 4 SCNGCRILRKGCSESCTIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINSGPDHLRPAIFRSLLYEACGRMVNPVYGSVGLLWSGNWPLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++ +l+++ XP_010916372.1 99 AVQNVLRGA 107 *99887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.483 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCSESCT IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINSGPDH 60 LRPAIFRSLL YEACGRMVNP VYGSVGLLWS GNWPLCQAAV QNVLRGAPIV QISSDSADAV 120 PPTKPYDIRH VAKKSDATAE IHKVAQSRPR FKKRSGHVIK PKAIPGFIAA EPGGGDPAVF 180 WGGSACGVEP PANVGESQEN GSVFSVESLG GSHVSQAEPH ESGAEAEVIR LDLTLGLRPM 240 EDRPVEVAAP GADASRVELG LGLLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916372.1 | 0.0 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 6e-77 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2H3YF08 | 1e-164 | A0A2H3YF08_PHODC; LOB domain-containing protein 41-like | ||||
STRING | XP_008797833.1 | 1e-165 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-79 | LOB domain-containing protein 41 |