PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916170.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 424aa    MW: 46085.6 Da    PI: 5.1656
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916170.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.41.5e-082163338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                    +r C+ + + +++++C  ++ +lC+ C ++ H+        H+
  XP_010916170.1 21 ARACDSCLRRRARWYCAADDACLCQACDSSVHSAnplarrhHR 63
                    578*****************************65777777554 PP
2CCT68.81.4e-23367410144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_010916170.1 367 REAKVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 410
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4951966IPR000315B-box-type zinc finger
SMARTSM003362.2E-91966IPR000315B-box-type zinc finger
PfamPF006436.3E-72162IPR000315B-box-type zinc finger
CDDcd000214.09E-92266No hitNo description
PfamPF062035.2E-18367409IPR010402CCT domain
PROSITE profilePS5101716.093367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSHHHCDKQR SSAGALGAKT ARACDSCLRR RARWYCAADD ACLCQACDSS VHSANPLARR  60
HHRLRLKTTS FSPPSSASSD DAPPPWLHGF RRKARTPRGK PAPAGPPKLE PLVPDLEADE  120
KLHTEEEHLL YRVPIFDPAL AEFCSPPALD DANALTDEAK PAVQQPPEHA HVPAAAAGFH  180
PSDLDLAEFA ADVESLLGRG LDDDTFCIDA LGLMDSAEDD NKGRVKVELD VDAGGERTDF  240
VACDIDVEID LSRETLDLDF GCGSPAAVED LEEQEAAEEA AMASDGGCGT EAVAAGRRMT  300
LRLDYEAVIA AWSCKDCSPW TDGERPQFNP DDCWPDFTGM MWGGAGGGRE VAPVYGELGM  360
VAGDGGREAK VTRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA AFPAVGPAAA  420
SFPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377393RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916170.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2H3WXF70.0A0A2H3WXF7_PHODC; zinc finger protein CONSTANS-LIKE 16
STRINGXP_008775153.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-64B-box type zinc finger protein with CCT domain