PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010916031.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 455aa MW: 50454 Da PI: 8.0869

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916031.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	56	76	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_010916031.1 56 CEICGKGFQRDQNLQLHRRGH 76 *******************88 PP
2	zf-C2H2	13.5	0.00021	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_010916031.1 130 WKCEKCSKRYAVQSDWKAHSKTC 152 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.9E-5	53	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.26E-7	53	76	No hit	No description
SMART	SM00355	0.076	54	76	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	54	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	290	95	125	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	118	151	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.26E-7	125	150	No hit	No description
SMART	SM00355	130	130	150	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MAGQAISDAF PLNACQDPNP PPVVKKKRNL PGTPDPEAEV IALSPRTLLA TNRFLCEICG 60 KGFQRDQNLQ LHRRGHNLPW KLRQRSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH 120 FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGILFSRRDS FITHRAFCDA 180 LAEETARVAA TSNINNMAPI GDADYLFTGS SMRSNMSQNF SSNIKPHTPN CEANDQARPG 240 LSLWMGHGIQ NGEPLSRTPN LSDINQIGPM GAGTLYDDLF TSCSNVQQLD TQLSWLCGNK 300 LWPTGTCELT GTSIPTTTMK EVDSSQSLLT SIPSLFSTQH QHHRAPVSEM SATALLQKAT 360 QIGVTSTIPF VGSFEPSKCQ DIRIEDASLK YDGLVNSNQL SNLENIVNGF TESNDMFAER 420 HRSSLKDDLE GDGETRDFLG VGVQTLCPSL INAWI

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MAGQAISDAF PLNACQDPNP PPVVKKKRNL PGTPDPEAEV IALSPRTLLA TNRFLCEICG  60
KGFQRDQNLQ LHRRGHNLPW KLRQRSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH  120
FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGILFSRRDS FITHRAFCDA  180
LAEETARVAA TSNINNMAPI GDADYLFTGS SMRSNMSQNF SSNIKPHTPN CEANDQARPG  240
LSLWMGHGIQ NGEPLSRTPN LSDINQIGPM GAGTLYDDLF TSCSNVQQLD TQLSWLCGNK  300
LWPTGTCELT GTSIPTTTMK EVDSSQSLLT SIPSLFSTQH QHHRAPVSEM SATALLQKAT  360
QIGVTSTIPF VGSFEPSKCQ DIRIEDASLK YDGLVNSNQL SNLENIVNGF TESNDMFAER  420
HRSSLKDDLE GDGETRDFLG VGVQTLCPSL INAWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	126	195	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-36	126	195	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916031.1	0.0	zinc finger protein NUTCRACKER
Swissprot	Q9ZWA6	1e-131	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2H3XGB0	0.0	A0A2H3XGB0_PHODC; zinc finger protein MAGPIE-like
STRING	XP_008783278.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-128	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]