PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010915986.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 961aa MW: 105530 Da PI: 6.238

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915986.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	586	637	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rki+++ XP_010915986.1 586 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKINKV 637 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.54	576	657	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-20	865	951	No hit	No description
PROSITE profile	PS51745	18.261	866	948	IPR000270	PB1 domain
SMART	SM00666	5.2E-23	866	948	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.9E-24	866	947	No hit	No description
Pfam	PF00564	4.3E-15	866	947	IPR000270	PB1 domain
CDD	cd06407	1.06E-32	867	947	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MSAAGDGDEG KGPFAARREL MDLDLDPASW PFDPIALITG PPSPSFLASS SPQSLLQFPF 60 LSPPSPLWLF EDRGFDASNS LPRFVSCNSD ATNGNISSGA NDNTRQRQLS SEEENSNGSC 120 MFKERMSQAL RYLKDSTNQH LLVQVWAPVK NGNRYVLTTS EQPFVLDPRS VGLLHYRTVS 180 VTYRFSVDGD QDGDLGLPGR VFRQKVPEWT PDVQYYSTKE YPRLSHALHD NVRGTLALPV 240 FEPCDQSCIG VVELIMTSPK INYAGEVDKV CKALKAVNLK SSEILNHPNV QICNEGRQAA 300 LAEILKILTM VCEAYKLPLA QTWVPCRHRS ILAHGGGLKK NCSSFDGTCM GQVCMSTTDV 360 AFHVIDAHMW GFREACVEHH LQKGQGVAGR AFASRRPCFS KDITQFSKIE YPLVHYARMF 420 GLACCFALCL QSTQTGHDDY VLEFFLPPDC EDAGEQLALL QSMTTMMEKC FCSLKVITDV 480 ELQEGSSLEV IDMLEIGSQK SEPKPIYMRC CENGLHTFPE CNLVEGLNGM QKEKNAIPEL 540 SEQHFLTDSN DGKNTKIVVD SSGTGTPCSS LVNKKNRPLE RRRGKAEKTI SLEVLQQYFA 600 GSLKDAAKSL GVCPTTMKRI CRHHGISRWP SRKINKVNRS LSKLKGVIES VHGSGGFDLT 660 SLTGPLPVAV GSISWPIKLD NSKQSEGAKV LDPHGKRDKG SLMHKSVEDE EQCKMFIAQQ 720 DSVRDCDIQL GPGKPSYSSK SGSSSGEGSM NPPTSEGSCQ GSPMNETHMG KPFASSILQI 780 GENISDPLGF PEQTAQDLNR LAVCSISDAI AVEPQPPLDG ILIKDPGNSN DLKDLCTSTM 840 HDCHDDNALG PTSDPAKPMS IQDLRTVTIK ASYKEDIIRF RMRCTAGIIP LRNEIAKRLK 900 LEIGTFDIKY LDDDHEWVML ACYADLQECM EISRLSGGRV IRLSVNDILP SPGSSCESSG 960 G

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MSAAGDGDEG KGPFAARREL MDLDLDPASW PFDPIALITG PPSPSFLASS SPQSLLQFPF  60
LSPPSPLWLF EDRGFDASNS LPRFVSCNSD ATNGNISSGA NDNTRQRQLS SEEENSNGSC  120
MFKERMSQAL RYLKDSTNQH LLVQVWAPVK NGNRYVLTTS EQPFVLDPRS VGLLHYRTVS  180
VTYRFSVDGD QDGDLGLPGR VFRQKVPEWT PDVQYYSTKE YPRLSHALHD NVRGTLALPV  240
FEPCDQSCIG VVELIMTSPK INYAGEVDKV CKALKAVNLK SSEILNHPNV QICNEGRQAA  300
LAEILKILTM VCEAYKLPLA QTWVPCRHRS ILAHGGGLKK NCSSFDGTCM GQVCMSTTDV  360
AFHVIDAHMW GFREACVEHH LQKGQGVAGR AFASRRPCFS KDITQFSKIE YPLVHYARMF  420
GLACCFALCL QSTQTGHDDY VLEFFLPPDC EDAGEQLALL QSMTTMMEKC FCSLKVITDV  480
ELQEGSSLEV IDMLEIGSQK SEPKPIYMRC CENGLHTFPE CNLVEGLNGM QKEKNAIPEL  540
SEQHFLTDSN DGKNTKIVVD SSGTGTPCSS LVNKKNRPLE RRRGKAEKTI SLEVLQQYFA  600
GSLKDAAKSL GVCPTTMKRI CRHHGISRWP SRKINKVNRS LSKLKGVIES VHGSGGFDLT  660
SLTGPLPVAV GSISWPIKLD NSKQSEGAKV LDPHGKRDKG SLMHKSVEDE EQCKMFIAQQ  720
DSVRDCDIQL GPGKPSYSSK SGSSSGEGSM NPPTSEGSCQ GSPMNETHMG KPFASSILQI  780
GENISDPLGF PEQTAQDLNR LAVCSISDAI AVEPQPPLDG ILIKDPGNSN DLKDLCTSTM  840
HDCHDDNALG PTSDPAKPMS IQDLRTVTIK ASYKEDIIRF RMRCTAGIIP LRNEIAKRLK  900
LEIGTFDIKY LDDDHEWVML ACYADLQECM EISRLSGGRV IRLSVNDILP SPGSSCESSG  960
G

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915986.2	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2H3XFV6	0.0	A0A2H3XFV6_PHODC; protein NLP3-like isoform X1
STRING	XP_008783157.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7