PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 77843.5 Da PI: 7.0088 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.5 | 2.9e-24 | 115 | 215 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k lt sd++++g +++ +++a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ XP_010915982.1 115 FCKSLTASDTSTHGGFSILRRHATEClppldMSQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGESG 207 99*****************************77777888*************************************************..44999 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r XP_010915982.1 208 ELRVGVRR 215 9*****98 PP | |||||||
2 | Auxin_resp | 100.3 | 2.7e-33 | 241 | 320 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F v+Y+Pr+ s+F+v v+k+++a+k+ ++vGmRfkm+fe+ed++e+ ++Gtvvgv+d+++ +W +SkWrsLk XP_010915982.1 241 ASHAVSTGTLFIVCYKPRT--SQFIVGVNKYLEAVKNGFTVGMRFKMRFESEDVPEKWFTGTVVGVEDVSS-QWADSKWRSLK 320 789***************6..9**********************************************888.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-40 | 105 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-38 | 109 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.42E-20 | 114 | 215 | No hit | No description |
PROSITE profile | PS50863 | 11.914 | 115 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-22 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-22 | 115 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-30 | 241 | 320 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.8E-13 | 556 | 668 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.1E-11 | 577 | 655 | No hit | No description |
PROSITE profile | PS51745 | 26.138 | 579 | 671 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MEAGLGEQDL TEELWRLCAG PLVEVPREKE KVFYFPQGHM EQLEASTNQE LNQKIPRFNL 60 PSKILCRVVN VQLRAEPETD EVYAQITLHP QPDQSEPTSL DPSPPEARRP TVYSFCKSLT 120 ASDTSTHGGF SILRRHATEC LPPLDMSQPT PTQELVAKDL HGFEWRFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDAFV FLRGESGELR VGVRRLAKQQ SMIPTSVISS QSMHLGVLAT 240 ASHAVSTGTL FIVCYKPRTS QFIVGVNKYL EAVKNGFTVG MRFKMRFESE DVPEKWFTGT 300 VVGVEDVSSQ WADSKWRSLK VQWDEATNIL RPDRVSPWEI EPFNTPAPAL NAAQPVLVKN 360 KRPRLPMDMV GYPVRGKQEP TSPFWYPGTT HSHELDGLSS VDANSTETQV IWPCTQKENK 420 GNGVKNGPGS CDPMVLDGWL KGLHSPIKSP ASSLTDVSLK HETKVASWPV IPGCMMEEPT 480 LKLGNGVEEQ KKPEVRSSSC WLFGIDLMNH SKSTTISEKA IAAPALSKSA APIEGPSKAT 540 ASVNESDRQS GLSKSSREQK QGHDSSPKEI QSKHHGSTRS RTKVHMQGMA VGRAVDLTNL 600 EGYNELITEL EQMFEIEGEL RQRNKWEVVF TDDEGDMMLV GDDPWPLFCK MVRKIFIYTS 660 EEVKKMKPKS KLSAAPSAEA EEAGGTLVDA AFIPNEPKAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-175 | 3 | 345 | 12 | 357 | Auxin response factor 1 |
4ldw_A | 1e-175 | 3 | 345 | 12 | 357 | Auxin response factor 1 |
4ldw_B | 1e-175 | 3 | 345 | 12 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915982.1 | 0.0 | auxin response factor 9 | ||||
Swissprot | Q5NB85 | 0.0 | ARFA_ORYSJ; Auxin response factor 1 | ||||
TrEMBL | A0A2H3XG74 | 0.0 | A0A2H3XG74_PHODC; Auxin response factor | ||||
STRING | XP_008783166.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Publications ? help Back to Top | |||
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