PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915982.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 700aa    MW: 77843.5 Da    PI: 7.0088
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915982.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-24115215198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_010915982.1 115 FCKSLTASDTSTHGGFSILRRHATEClppldMSQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGESG 207
                     99*****************************77777888*************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_010915982.1 208 ELRVGVRR 215
                     9*****98 PP

2Auxin_resp100.32.7e-33241320183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F+v v+k+++a+k+ ++vGmRfkm+fe+ed++e+ ++Gtvvgv+d+++ +W +SkWrsLk
  XP_010915982.1 241 ASHAVSTGTLFIVCYKPRT--SQFIVGVNKYLEAVKNGFTVGMRFKMRFESEDVPEKWFTGTVVGVEDVSS-QWADSKWRSLK 320
                     789***************6..9**********************************************888.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-40105244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-38109230IPR015300DNA-binding pseudobarrel domain
CDDcd100175.42E-20114215No hitNo description
PROSITE profilePS5086311.914115217IPR003340B3 DNA binding domain
SMARTSM010191.5E-22115217IPR003340B3 DNA binding domain
PfamPF023624.0E-22115215IPR003340B3 DNA binding domain
PfamPF065071.5E-30241320IPR010525Auxin response factor
PfamPF023095.8E-13556668IPR033389AUX/IAA domain
SuperFamilySSF542775.1E-11577655No hitNo description
PROSITE profilePS5174526.138579671IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEAGLGEQDL TEELWRLCAG PLVEVPREKE KVFYFPQGHM EQLEASTNQE LNQKIPRFNL  60
PSKILCRVVN VQLRAEPETD EVYAQITLHP QPDQSEPTSL DPSPPEARRP TVYSFCKSLT  120
ASDTSTHGGF SILRRHATEC LPPLDMSQPT PTQELVAKDL HGFEWRFKHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDAFV FLRGESGELR VGVRRLAKQQ SMIPTSVISS QSMHLGVLAT  240
ASHAVSTGTL FIVCYKPRTS QFIVGVNKYL EAVKNGFTVG MRFKMRFESE DVPEKWFTGT  300
VVGVEDVSSQ WADSKWRSLK VQWDEATNIL RPDRVSPWEI EPFNTPAPAL NAAQPVLVKN  360
KRPRLPMDMV GYPVRGKQEP TSPFWYPGTT HSHELDGLSS VDANSTETQV IWPCTQKENK  420
GNGVKNGPGS CDPMVLDGWL KGLHSPIKSP ASSLTDVSLK HETKVASWPV IPGCMMEEPT  480
LKLGNGVEEQ KKPEVRSSSC WLFGIDLMNH SKSTTISEKA IAAPALSKSA APIEGPSKAT  540
ASVNESDRQS GLSKSSREQK QGHDSSPKEI QSKHHGSTRS RTKVHMQGMA VGRAVDLTNL  600
EGYNELITEL EQMFEIEGEL RQRNKWEVVF TDDEGDMMLV GDDPWPLFCK MVRKIFIYTS  660
EEVKKMKPKS KLSAAPSAEA EEAGGTLVDA AFIPNEPKAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-175334512357Auxin response factor 1
4ldw_A1e-175334512357Auxin response factor 1
4ldw_B1e-175334512357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915982.10.0auxin response factor 9
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2H3XG740.0A0A2H3XG74_PHODC; Auxin response factor
STRINGXP_008783166.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]