PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915853.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CPP
Protein Properties Length: 546aa    MW: 59360.5 Da    PI: 7.1077
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915853.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.52.6e-1383122242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  XP_010915853.1  83 KQKQCNCKNSRCLKLYCECFASGLYCDG-CNCVNCCNNVEN 122
                     89**************************.********9875 PP
2TCR51.42.2e-16167206140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  XP_010915853.1 167 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNYE 206
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-1482122IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.83283207IPR005172CRC domain
PfamPF036389.0E-1084119IPR005172CRC domain
SMARTSM011143.7E-20167208IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12170205IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEQGIKSAAP VPSDFPLKKL ARQLDFTAAH CGAPGAGGPV ALEQPSPVPL PVSRHSIQAS  60
VKPESPRSRP LPIFEAKDGT PKKQKQCNCK NSRCLKLYCE CFASGLYCDG CNCVNCCNNV  120
ENEAARQEAV EATLERNPNA FRPKIDNSPH ANRDNREETG DLPLVGKHNK GCHCKKSGCL  180
KKYCECFQAN ILCSDNCKCM DCKNYEGSEE RRALFHSDLG NSHSYLQQAA NAALNGAIGS  240
SGFGSPPAFK KRKSQELFLP PTVKDQSLLR LGQFPQANHM KTAGPALSFT SSPVAHSINP  300
NPLGSSKVTY RSPLAEVVQP EDVKELSKFL VIVSSEVART FADQKAHEEK PTEREDQTDC  360
SLASSNQDSD EKQREPGILN ASVDDHSNGT DVDKANMEDS GSDHVDEPKG GRPMSPGTLA  420
LMCDEQDTMF MTSQNNSTSS MFLSNQNVSD VYVEQERHVL MGLRDCLQRL ITCGKMKEVQ  480
CSSMAMKFGT TNHQDSVSKV PMPNSADANR SMNSVPTSAS SSLTPKAGNH SIANGDRKTK  540
TENSYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-31752162132Protein lin-54 homolog
5fd3_B4e-31752162132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915853.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-159TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2H3YMN40.0A0A2H3YMN4_PHODC; protein tesmin/TSO1-like CXC 5
STRINGXP_008800911.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-137Tesmin/TSO1-like CXC domain-containing protein