PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 11122.5 Da PI: 5.3079 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.7e-08 | 29 | 68 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l ++ ++ G + W++Ia +++ gR ++++ +w XP_010915677.1 29 MTEQEEDLVYRMYRLVGDR-WDLIAGRIP-GRKPEEIERFWI 68 7****************99.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.0E-5 | 25 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.86E-6 | 28 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 29 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-7 | 29 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.017 | 30 | 67 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.57E-7 | 30 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MDKRPRKQAR TCGYDSEEVS SEEWEFINMT EQEEDLVYRM YRLVGDRWDL IAGRIPGRKP 60 EEIERFWIMR HGEAFAEKRN GKRRLAEVQL SD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 84 | KRNGKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915677.1 | 2e-62 | transcription factor TRY | ||||
Swissprot | Q8GV05 | 1e-38 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A2H3XZI7 | 8e-48 | A0A2H3XZI7_PHODC; transcription factor TRY-like isoform X1 | ||||
STRING | XP_008791027.1 | 1e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 4e-41 | MYB_related family protein |