PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 35670.6 Da PI: 7.6033 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.4e-54 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_010915633.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 103 69****************************.9***************943444443456************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++ +g++ktLvfy+grap+g+ktdW+mheyrl XP_010915633.1 104 HLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-59 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.324 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MHPGNGQLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIRDVDLNKL EPWDLKDKCR 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD DESTDVQEDG WVVCRVFKKK NHQRGIPPEA ILEDDQLDPL 180 RANGYASMEQ KQNFQLPCNF SFDSNMHLPQ LLSSESTIPP LMPPVSMNAL DLECSQNLMK 240 LTSGNGGGPL PHERFTGNWS ILDKLLASHQ NLDQLIQSKC NPLSQLMDMG SSVHRFPLQY 300 LGCEADLLKF SK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 7 | 161 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 7 | 161 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 7 | 161 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 7 | 161 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 7 | 161 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 7 | 161 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 7 | 161 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915633.1 | 0.0 | NAC domain-containing protein 76 | ||||
Swissprot | Q9MA17 | 1e-116 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A2H3XHJ0 | 0.0 | A0A2H3XHJ0_PHODC; LOW QUALITY PROTEIN: protein SOMBRERO-like | ||||
STRING | XP_008783883.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-108 | NAC family protein |
Publications ? help Back to Top | |||
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