PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 419aa MW: 44143.7 Da PI: 7.7729 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.8e-37 | 49 | 138 | 2 | 93 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ ++ c++++ s s+ + s+ ++++ XP_010915589.1 49 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELAELPAWHP--CSTSAASASNPPPASDPQETQ 138 79**************************************************************44444..522222222222222212222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.3E-32 | 49 | 123 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.086 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MAEAHGHGHG LLALHHGHQQ QHQRPRFGGG LSGAGEIVEV QGGHIVRSTG RKDRHSKVCT 60 AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK NAKAAIDELA ELPAWHPCST 120 SAASASNPPP ASDPQETQAL VAANQPVGDS SKKPIPVAEP VASAAFSFGG GTGGGSGSAS 180 FLPPSLDSDA IADTIKSFFP MGAAAATATA TAPPSSPPIG FQNYPPDLLS RSSSQDLRLS 240 LQSFQDPTFH NPRSSHHHQR HHPQSQHLHQ NPAPSVQQAL FSGSAHLAFD TASAGWSEQS 300 HRMFPWNVAE TGGGGGGYVF HVPPPQAVPP HPVLGQSHFF TQRGPLQSSN SPAIRAWADP 360 IVSATDQQLH PALHPSLSSI GFASGAGFSG FRIPARIQGE EEHDGISNKP PSASSASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 56 | 109 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 56 | 109 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915589.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_019704402.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_019704403.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | Q8LPR5 | 3e-98 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2H3XHJ8 | 0.0 | A0A2H3XHJ8_PHODC; transcription factor PCF5-like | ||||
STRING | XP_008783922.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 7e-66 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |