PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915444.1
Common NameAG1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27282.8 Da    PI: 9.4789
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915444.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_010915444.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                    79***********************************************8 PP
2K-box112.83.5e-37771734100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++++qqe++kL+++i +Lq+++R+l+Ge+L+s+s ++L+qLe +Lek+++kiR+kKnell+++ie++qk+e elq++n++Lr+k+
  XP_010915444.1  77 SNSGSVSEADSQYYQQESTKLRQQIISLQNSNRNLMGESLGSMSPRDLKQLEGRLEKGINKIRTKKNELLFAEIEYMQKREVELQNANMYLRNKI 171
                     444559****************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_010915444.1 172 AE 173
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.132161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42160IPR002100Transcription factor, MADS-box
CDDcd002652.07E-44270No hitNo description
SuperFamilySSF554553.92E-33273IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.63187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVKATIERYK RACTDTSNSG SVSEADSQYY QQESTKLRQQ IISLQNSNRN LMGESLGSMS  120
PRDLKQLEGR LEKGINKIRT KKNELLFAEI EYMQKREVEL QNANMYLRNK IAENERAQQQ  180
MNMLPQTTEY EVMAPYDSRN FLQVNLMQSN QHYSHQQQTT LQLGYEPSLY YQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21169169Myocyte-specific enhancer factor 2B
1tqe_Q3e-21169169Myocyte-specific enhancer factor 2B
1tqe_R3e-21169169Myocyte-specific enhancer factor 2B
1tqe_S3e-21169169Myocyte-specific enhancer factor 2B
6c9l_A3e-21169169Myocyte-specific enhancer factor 2B
6c9l_B3e-21169169Myocyte-specific enhancer factor 2B
6c9l_C3e-21169169Myocyte-specific enhancer factor 2B
6c9l_D3e-21169169Myocyte-specific enhancer factor 2B
6c9l_E3e-21169169Myocyte-specific enhancer factor 2B
6c9l_F3e-21169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915443.11e-172MADS-box transcription factor 3 isoform X1
RefseqXP_010915444.11e-172MADS-box transcription factor 3 isoform X1
RefseqXP_010915445.11e-172MADS-box transcription factor 3 isoform X1
RefseqXP_029119059.11e-172MADS-box transcription factor 3 isoform X1
SwissprotQ407041e-125MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLQ2NNC31e-162Q2NNC3_ELAGV; MADS box transcription factor
STRINGXP_008791911.11e-155(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Adam H, et al.
    MADS box genes in oil palm (Elaeis guineensis): patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies.
    J. Mol. Evol., 2006. 62(1): p. 15-31
    [PMID:16320117]