PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915442.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28560.5 Da    PI: 10.1328
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915442.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-314392150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_010915442.1 43 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 92
                    79***********************************************8 PP
2K-box75.21.8e-25111200493
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                     s++ s++ea+++++qqe++kL+++i +Lq+++R+l+Ge+L+s+s ++L+qLe +Lek+++kiR+kK++ +  q  ++  ++k +++e  +
  XP_010915442.1 111 SNSGSVSEADSQYYQQESTKLRQQIISLQNSNRNLMGESLGSMSPRDLKQLEGRLEKGINKIRTKKKREVELQNANMYLRNKIAENERAQ 200
                     444559***********************************************************9987777766665555555555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-423594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1323595IPR002100Transcription factor, MADS-box
CDDcd002656.57E-4436104No hitNo description
SuperFamilySSF554554.32E-3336107IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-333757IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003791IPR002100Transcription factor, MADS-box
PfamPF003199.2E-274491IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-335772IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-337293IPR002100Transcription factor, MADS-box
PfamPF014863.6E-18118198IPR002487Transcription factor, K-box
PROSITE profilePS5129712.467121209IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MIISPSRSQF HPLIRLWCEG RRSQEVAALE RPEKMGRGKI EIKRIENTTN RQVTFCKRRN  60
GLLKKAYELS VLCDAEVALI VFSSRGRLYE YANNSVKATI ERYKRACTDT SNSGSVSEAD  120
SQYYQQESTK LRQQIISLQN SNRNLMGESL GSMSPRDLKQ LEGRLEKGIN KIRTKKKREV  180
ELQNANMYLR NKIAENERAQ QQMNMLPQTT EYEVMAPYDS RNFLQVNLMQ SNQHYSHQQQ  240
TTLQLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-2135103169Myocyte-specific enhancer factor 2B
1tqe_Q3e-2135103169Myocyte-specific enhancer factor 2B
1tqe_R3e-2135103169Myocyte-specific enhancer factor 2B
1tqe_S3e-2135103169Myocyte-specific enhancer factor 2B
6byy_A4e-2135103169MEF2 CHIMERA
6byy_B4e-2135103169MEF2 CHIMERA
6byy_C4e-2135103169MEF2 CHIMERA
6byy_D4e-2135103169MEF2 CHIMERA
6c9l_A3e-2135103169Myocyte-specific enhancer factor 2B
6c9l_B3e-2135103169Myocyte-specific enhancer factor 2B
6c9l_C3e-2135103169Myocyte-specific enhancer factor 2B
6c9l_D3e-2135103169Myocyte-specific enhancer factor 2B
6c9l_E3e-2135103169Myocyte-specific enhancer factor 2B
6c9l_F3e-2135103169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915446.11e-151MADS-box transcription factor 3 isoform X2
RefseqXP_019705068.11e-151MADS-box transcription factor 3 isoform X2
SwissprotQ407041e-111MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLQ2NNC31e-148Q2NNC3_ELAGV; MADS box transcription factor
STRINGXP_008791911.11e-137(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]