PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915410.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92063.5 Da    PI: 6.4631
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915410.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.5e-191876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010915410.1 18 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    5679*****************************************************97 PP
2START182.52.4e-571623702205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v m+++  v+e+l+d++ W ++++++++++v+  g  g+++l 
  XP_010915410.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGMEPT-KVAEILKDRPSWFRDCRSVDVINVLPAGnsGTIELL 255
                     789*******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++s+q  p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_010915410.1 256 YMQLYAPTTLAPaRDFWLLRYTSALEDGSLVVCERSLNSTQGGPSmpaVQPFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSIPEVLRPLY 350
                     ********************************************999899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_010915410.1 351 ESSTVLAQKTTMAALRHLRQ 370
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5641377IPR001356Homeobox domain
SMARTSM003891.1E-161581IPR001356Homeobox domain
CDDcd000865.69E-171678No hitNo description
SuperFamilySSF466897.27E-171781IPR009057Homeodomain-like
PfamPF000461.8E-161876IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182076IPR009057Homeodomain-like
CDDcd146861.14E-670109No hitNo description
PROSITE profilePS5084826.319152366IPR002913START domain
CDDcd088751.29E-82156371No hitNo description
Gene3DG3DSA:3.30.530.205.5E-25159367IPR023393START-like domain
SMARTSM002343.5E-42161371IPR002913START domain
SuperFamilySSF559617.42E-39161372No hitNo description
PfamPF018523.3E-55162370IPR002913START domain
PfamPF086701.9E-51695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MMAVSSGKEG KTAMDPGKYV RYTPEQVEAL ERLYHDCPKP SSMRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QTRNAALTTP DTSCESVVTS GQHHLTAQRP PRDASPAGLM SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVGMEPTK VAEILKDRPS WFRDCRSVDV  240
INVLPAGNSG TIELLYMQLY APTTLAPARD FWLLRYTSAL EDGSLVVCER SLNSTQGGPS  300
MPAVQPFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SIPEVLRPLY ESSTVLAQKT  360
TMAALRHLRQ IVHEVSQSTV TGWGRRPAAL RALSQRLSRG FNEALNGFAD DGWSMISGDG  420
TDDVTILVNS SPSRLMGLNL GFTNGFPSLS NAVLCAKASM LLQNVSPAML LRFVREHRSE  480
WADSNIDAYS AAAVRASPCT LPMSRIGCFG GQVILPLAHT LEHEEFLEVL KLENTGRSQD  540
ALMARDLFLL QLCSGVDENA VGTCSELVFA PIDASFADDA PLLPSGFRII PLDSVMENSS  600
PNRTLDLASA LEIGSTGNRV SGDYSGNSTS MRSVMTIAFQ FAFESHLQEN VACMARQYIR  660
NIISSVQRVA LALSPSHLGS HGGLRPPPGT PEAVTLVRWI CYSYRGHSGV ELLKTTTEGS  720
ESLLKILWHH SDAIICCSLK AMPVFTFANQ AGLDMLETTL VALQDITLEK IFDDQGRKTL  780
CTEFPHIMQQ GFACLQGGLC ISSMGRPVSY DSAVAWKVLN DEDEAHCICF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915409.10.0homeobox-leucine zipper protein ATHB-15 isoform X1
RefseqXP_010915410.10.0homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2H3Y0I20.0A0A2H3Y0I2_PHODC; homeobox-leucine zipper protein ATHB-15-like
STRINGXP_008791633.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]