PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915346.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 285aa    MW: 30956.7 Da    PI: 7.1749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915346.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + +++G+g +W + +++ g++R++k+c++rw++yl
   XP_010915346.1 14 RGPWSPEEDMVLKSYLERHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding41.82.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  +  + ++ G++ W+ Ia+ ++ gRt++++k++w++
   XP_010915346.1  69 GGFTEEEDNVICTLYNKIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.201962IPR017930Myb domain
SuperFamilySSF466897.49E-2811109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002492.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231569IPR009057Homeodomain-like
CDDcd001673.01E-81662No hitNo description
PROSITE profilePS5129420.95863117IPR017930Myb domain
SMARTSM007171.9E-1267115IPR001005SANT/Myb domain
PfamPF002495.5E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2470117IPR009057Homeodomain-like
CDDcd001676.71E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDMVLKSYLE RHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNVIC TLYNKIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKMMAA  120
QASLSTTTTT NTNLITHSPS PSSPPPLVIP TIKTESYTCD DFFTPFNHDA TSALAPTDPS  180
FMFGHGTSIP VAGLPGPSGL NGSVHHYSTA PHDDASTASC SYVNWSANGP GGDDAFFADF  240
GLESPCEFFN GYFGYQEKIG PSAPNQATLA SMLVSSDTKP QITYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915346.10.0transcription factor RAX2
TrEMBLA0A2H3YH111e-152A0A2H3YH11_PHODC; transcription factor RAX1-like
STRINGXP_008798607.11e-153(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-75myb domain protein 84