PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915342.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 254aa    MW: 27979.6 Da    PI: 10.5262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915342.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-15103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
   XP_010915342.1 103 PWTEEEHRTFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 147
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.515419IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.87996152IPR017930Myb domain
SuperFamilySSF466891.22E-1897153IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-1899151IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-12100146IPR009057Homeodomain-like
SMARTSM007175.9E-12100150IPR001005SANT/Myb domain
CDDcd001671.45E-10103148No hitNo description
PfamPF002491.4E-12103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMARKCSYCG NNGHNSRTCS SPRSLVGAGG LRLFGVQLQV ASPIKKSFSM ECLSSSSYPA  60
SSSSSPSSSS SLASIEENTD KTSNGYLSDG LVDRAQERKK GVPWTEEEHR TFLAGLEKLG  120
KGDWRGISRH FVTTRTPTQV ASHAQKYFLR QNSLHKKKRR SSLFDVVARS VQYNDSSRSR  180
DQFSSELEIP TRTTCHKVSM STSPSIMSRS SSLMAKPQIQ LQEPDLELTI APMRPLTQTK  240
ASPSSVFMGT IRVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915342.10.0transcription factor MYBS3 isoform X2
SwissprotQ7XC571e-52MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2H3YGW41e-122A0A2H3YGW4_PHODC; transcription factor KUA1-like
STRINGXP_008798617.11e-123(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-57MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]