PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915336.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 490aa    MW: 54690.3 Da    PI: 6.752
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915336.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-084124501854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_010915336.1 412 MFQNflHPYPKDNEKHLLAIKSGLTRSQVSNWFINARVR 450
                     5887779******************************88 PP

2BELL73.24.4e-24288352771
            BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                      kk+ L+++l+ Vd+rY+q+ +q++ vis+F  ++g g+a++++ +Al++iS  +++L+ +i+++
  XP_010915336.1 288 TKKTELVTMLQLVDQRYNQCIDQIHDVISAFCNATGSGTAHMHAWFALRTISSLYKNLRKRITSR 352
                     79************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.2E-16198351IPR006563POX domain
PfamPF075262.8E-29206350IPR006563POX domain
PROSITE profilePS5007111.353391454IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-26393467IPR009057Homeodomain-like
SMARTSM003892.5E-5394458IPR001356Homeobox domain
SuperFamilySSF466892.31E-15394462IPR009057Homeodomain-like
CDDcd000861.16E-10394455No hitNo description
PfamPF059201.9E-14411450IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEHDLFNASL SLPTHNELAI ESASLHMLSD PLTQSSLPGN NNHRQTMAGY PLLSTFQEEA  60
LNSLYAANNG DMFNGNLSYS RNMPHVGNTS YDGSNGNTDL REHFMGTCLS ATSLANLLSA  120
STCLHENLIN INTVSASSLP PEETRTSVSC DSCNTIDSSV TTSVNCAIVP QGDGGLLTSK  180
KGACLNGQFN YSWNYEEVLG REMPSGSRYL HVAQQILAEV ISYAVPDWHE MNSDSVAGIE  240
GEDKMSFSSS WSNIQELAIS GSDEYPLSSG EIKSQGLVDG QRCLEAFTKK TELVTMLQLV  300
DQRYNQCIDQ IHDVISAFCN ATGSGTAHMH AWFALRTISS LYKNLRKRIT SRLLLMTQRP  360
STECMREKEK SLESSLIQKQ WALQQLRRRD QHSWRPQRGL PEKSVSVLRA WMFQNFLHPY  420
PKDNEKHLLA IKSGLTRSQV SNWFINARVR LWKPMIEEMH SELTKKNQTD GSGGESRSHG  480
NIRGQRLQTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-14400458563Homeobox protein Meis2
4xrm_B1e-14400458563Homeobox protein Meis2
4xrs_A8e-15400457158Homeobox protein Meis1
4xrs_B8e-15400457158Homeobox protein Meis1
5bng_A9e-15400458159Homeobox protein Meis2
5bng_B9e-15400458159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915336.10.0BEL1-like homeodomain protein 3 isoform X3
SwissprotP487312e-77ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2H4A0470.0A0A2H4A047_PHODC; homeobox protein ATH1-like
STRINGXP_008811733.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.19e-80homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]