PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 490aa MW: 54690.3 Da PI: 6.752 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.9 | 1.7e-08 | 412 | 450 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + XP_010915336.1 412 MFQNflHPYPKDNEKHLLAIKSGLTRSQVSNWFINARVR 450 5887779******************************88 PP | |||||||
2 | BELL | 73.2 | 4.4e-24 | 288 | 352 | 7 | 71 |
BELL 7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 kk+ L+++l+ Vd+rY+q+ +q++ vis+F ++g g+a++++ +Al++iS +++L+ +i+++ XP_010915336.1 288 TKKTELVTMLQLVDQRYNQCIDQIHDVISAFCNATGSGTAHMHAWFALRTISSLYKNLRKRITSR 352 79************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.2E-16 | 198 | 351 | IPR006563 | POX domain |
Pfam | PF07526 | 2.8E-29 | 206 | 350 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.353 | 391 | 454 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 393 | 467 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-5 | 394 | 458 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-15 | 394 | 462 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-10 | 394 | 455 | No hit | No description |
Pfam | PF05920 | 1.9E-14 | 411 | 450 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MEHDLFNASL SLPTHNELAI ESASLHMLSD PLTQSSLPGN NNHRQTMAGY PLLSTFQEEA 60 LNSLYAANNG DMFNGNLSYS RNMPHVGNTS YDGSNGNTDL REHFMGTCLS ATSLANLLSA 120 STCLHENLIN INTVSASSLP PEETRTSVSC DSCNTIDSSV TTSVNCAIVP QGDGGLLTSK 180 KGACLNGQFN YSWNYEEVLG REMPSGSRYL HVAQQILAEV ISYAVPDWHE MNSDSVAGIE 240 GEDKMSFSSS WSNIQELAIS GSDEYPLSSG EIKSQGLVDG QRCLEAFTKK TELVTMLQLV 300 DQRYNQCIDQ IHDVISAFCN ATGSGTAHMH AWFALRTISS LYKNLRKRIT SRLLLMTQRP 360 STECMREKEK SLESSLIQKQ WALQQLRRRD QHSWRPQRGL PEKSVSVLRA WMFQNFLHPY 420 PKDNEKHLLA IKSGLTRSQV SNWFINARVR LWKPMIEEMH SELTKKNQTD GSGGESRSHG 480 NIRGQRLQTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-14 | 400 | 458 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-14 | 400 | 458 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 8e-15 | 400 | 457 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-15 | 400 | 457 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 9e-15 | 400 | 458 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 9e-15 | 400 | 458 | 1 | 59 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915336.1 | 0.0 | BEL1-like homeodomain protein 3 isoform X3 | ||||
Swissprot | P48731 | 2e-77 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A2H4A047 | 0.0 | A0A2H4A047_PHODC; homeobox protein ATH1-like | ||||
STRING | XP_008811733.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 9e-80 | homeobox gene 1 |
Publications ? help Back to Top | |||
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