PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010915311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1083aa MW: 120152 Da PI: 8.5533 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 45 | 81 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rW++e+ +++++a + +G++ Wk++a+ + +R+ ++ XP_010915311.1 45 SRWSKEDLKRFYEAYRTYGKD-WKKVAAVIR-NRSIDMV 81 59*****************99.*********.**97665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-10 | 36 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-7 | 46 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.76E-5 | 46 | 77 | No hit | No description |
SMART | SM01135 | 3.5E-50 | 616 | 717 | IPR033471 | DIRP domain |
Pfam | PF06584 | 3.4E-31 | 616 | 716 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1083 aa Download sequence Send to blast |
MGPTKKSRVV NKCSSKANEE RPDNDGTSTN NRKIRKRKSS DVLGSRWSKE DLKRFYEAYR 60 TYGKDWKKVA AVIRNRSIDM VEALYNMNRA YLSLPEGTAT AAGLVAMMSD HYNILDGSDN 120 DRDSNQVSKA SHKSQKHGHG KPPLDMPKGC EGPHPDYLQK LSAMSSSGCP PLLKNRFGDL 180 FGGNWPRAVG KRTPRFPVPF WHDNNERNNI ISPKRHDLNF REDASADEGV HGAVLALAEA 240 SQRGRPLQIS ETCDGKAECV GSSPMWSGKT GHAQPGMTNP GYNSFGIDRE SVQGSLQSME 300 ADNGGFTSDA RLSDIEGTGA RKIQSEVKKL QGKKSKGPGI QIHQFDDARE ACSGAEEGHN 360 VRHVKDEIDT EVREQKTAIG LQDPGKKIHE LFSPDESCAL DALQTLADLS VKILLPNSAS 420 KSTKQESDKS RISVIKDRGY SSDVGVHVVQ QKSVHMNLSP NENSIFEARK TVYSSISEMS 480 KRKWKHPEEM VSVEEGKTSS SGQLVPLAKQ RKNIQMPGCS SLSTDLGRGV TSLTEPNPQV 540 LAANHPSVPT RTRNRRKISL QKAMAQRKSR FSDGVGDQGL SACSHFANSK AADLEGKLSH 600 CLSSQLLRRW CAFEWFYSSI DYPWFARSEY VEYLNYVRLG HVPRLTRCEW SIVRSSLGKP 660 RRLSKQFLSE EREKLNQYRE SVRTYYDELR AGVREGLPED LARPLSVGQR VIARHPRKGE 720 IHDGSILTVD RDQCRVQFDR PDLGVEFVMG DMKDANALGK YSASEVAVVA PHTIGNQPYT 780 SAQIQEREAD VRALVELTCA LNKQEALLME LREMNEEAAG KKKDGDSERD LGHFRKQYNT 840 MVVSWLREAS DQVRSALLVL RQRNTFHGIS ASPLHRATEK SGLAGCSGTF STFDLYNHDE 900 GSQVVEIVEN SMFKARKMVD VAVQAMSSLR NGEDALTGIE EALESKNDQC FRTESSKSRI 960 RCIPHPGNGN SQNQAVSSIL QPAITHVLNP RVQFSSADVP QILSELISSC VAAVLMIQAC 1020 TARQYPPAEV AQILEYAVAS LQPCCSQNLP IYREIETYMG IIKNQMLALI PSSSTSFCPE 1080 VSV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915308.1 | 0.0 | protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A3Q0HUY8 | 0.0 | A0A3Q0HUY8_PHODC; protein ALWAYS EARLY 3-like isoform X2 | ||||
STRING | XP_008782502.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-62 | DNA binding |