PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Whirly | ||||||||
Protein Properties | Length: 233aa MW: 25560.1 Da PI: 9.6564 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 120.1 | 1.4e-37 | 109 | 194 | 54 | 139 |
Whirly 54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +f+ls+ e+++l+ l+ k+sceffhdp+++ s+eGk+rk++k ePlpdGsG+f+nlsv+n l++++es+++P++kaefa+l+s+++ XP_010915150.1 109 VFSLSVPEIGTLLALGGKDSCEFFHDPFKGRSEEGKIRKVFKAEPLPDGSGHFFNLSVQNRLLNVDESIYIPITKAEFAILNSAFN 194 7*********************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 7.7E-8 | 78 | 108 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.33E-56 | 80 | 233 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 1.1E-42 | 109 | 215 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-31 | 109 | 191 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MPLRGSSLVS LQNSPSPHPL LPSNSFKNVL SPGTLAPNRK KLSVSCRRSD YFDQQRFASP 60 TPRDSSFASQ PPGGPAVQSS RVFVGYSIYK GKAALTVEPK APEFTPLDVF SLSVPEIGTL 120 LALGGKDSCE FFHDPFKGRS EEGKIRKVFK AEPLPDGSGH FFNLSVQNRL LNVDESIYIP 180 ITKAEFAILN SAFNFILPYL LGWHAFANAI KPEDSIRSNN MTARSGAELE WGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 4e-81 | 47 | 231 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 4e-81 | 47 | 231 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 4e-81 | 47 | 231 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 4e-81 | 47 | 231 | 12 | 218 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915145.1 | 1e-163 | single-stranded DNA-binding protein WHY1, chloroplastic isoform X1 | ||||
Refseq | XP_010915146.1 | 1e-163 | single-stranded DNA-binding protein WHY1, chloroplastic isoform X1 | ||||
Swissprot | Q9LL85 | 1e-85 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A3Q0IL68 | 1e-143 | A0A3Q0IL68_PHODC; single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
STRING | XP_008809721.1 | 1e-144 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 5e-86 | ssDNA-binding transcriptional regulator |