PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Whirly | ||||||||
Protein Properties | Length: 266aa MW: 29305.5 Da PI: 9.7235 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 207.2 | 1.8e-64 | 87 | 225 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 s+yk+kaal+v++++p+f+ ldsg++kl+++G++ll++a+a+a r+ydW++kq+f+ls+ e+++l+ l+ k+sceffhdp+++ s+eGk+rk++k XP_010915143.1 87 SIYKGKAALTVEPKAPEFTPLDSGAFKLSKEGFILLQFAPAAAARQYDWNRKQVFSLSVPEIGTLLALGGKDSCEFFHDPFKGRSEEGKIRKVFK 181 7********************************************************************************************** PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ePlpdGsG+f+nlsv+n l++++es+++P++kaefa+l+s+++ XP_010915143.1 182 AEPLPDGSGHFFNLSVQNRLLNVDESIYIPITKAEFAILNSAFN 225 ****************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.8E-65 | 78 | 225 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.12E-60 | 80 | 226 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.3E-58 | 88 | 222 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MPLRGSSLVS LQNSPSPHPL LPSNSFKNVL SPGTLAPNRK KLSVSCRRSD YFDQQRFASP 60 TPRDSSFASQ PPGGPAVQSS RVFVGYSIYK GKAALTVEPK APEFTPLDSG AFKLSKEGFI 120 LLQFAPAAAA RQYDWNRKQV FSLSVPEIGT LLALGGKDSC EFFHDPFKGR SEEGKIRKVF 180 KAEPLPDGSG HFFNLSVQNR LLNVDESIYI PITKAEFAIL NSAFNRMESD VFAVYLTIPS 240 GLACFCKCHQ TRGLHSFKQY DCAIRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 3e-86 | 47 | 225 | 12 | 181 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 3e-86 | 47 | 225 | 12 | 181 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 3e-86 | 47 | 225 | 12 | 181 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 3e-86 | 47 | 225 | 12 | 181 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915145.1 | 1e-162 | single-stranded DNA-binding protein WHY1, chloroplastic isoform X1 | ||||
Refseq | XP_010915146.1 | 1e-162 | single-stranded DNA-binding protein WHY1, chloroplastic isoform X1 | ||||
Swissprot | Q66GR6 | 1e-89 | WHY3_ARATH; Single-stranded DNA-binding protein WHY3, chloroplastic | ||||
Swissprot | Q9LL85 | 2e-89 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A3Q0IL68 | 1e-142 | A0A3Q0IL68_PHODC; single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
STRING | XP_008809721.1 | 1e-142 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 2e-91 | ssDNA-binding transcriptional regulator |
Publications ? help Back to Top | |||
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