PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914654.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 275aa    MW: 31219.6 Da    PI: 5.7126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914654.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l+++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
   XP_010914654.1 22 RGPWTVEEDLKLINYIAVHGEGRWNTLARCAGLKRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding54.33e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010914654.1  75 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.511769IPR017930Myb domain
SuperFamilySSF466891.09E-3119116IPR009057Homeodomain-like
SMARTSM007175.6E-162171IPR001005SANT/Myb domain
PfamPF002497.1E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-232376IPR009057Homeodomain-like
CDDcd001672.85E-122469No hitNo description
PROSITE profilePS5129425.30470124IPR017930Myb domain
SMARTSM007171.6E-1574122IPR001005SANT/Myb domain
PfamPF002494.7E-1675118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2477123IPR009057Homeodomain-like
CDDcd001678.39E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEAHGRVLSS ATPSEEEMDL RRGPWTVEED LKLINYIAVH GEGRWNTLAR CAGLKRTGKS  60
CRLRWLNYLR PDVRRGNITP EEQLLILELH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV  120
QKQAKQLQCD VNSKKFKDAM RYLWMPRLIE RIQAASGGSL QASNLLPDHP AGQPGQAWPC  180
QENSASAPAG SNSSDSVVTQ FSSPPTSDSF TGDYYNYPDN CIQGGENNSD EGTQAGFAQL  240
EDGWYENRGF LDFEQGGWGE NLWSLEDIWS TQQQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26191244108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914654.10.0transcription factor MYB78
SwissprotQ10MB44e-88MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2H3Y4W61e-119A0A2H3Y4W6_PHODC; transcription factor MYB2-like
STRINGXP_008793362.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-88myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]