PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914622.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 1150aa    MW: 127845 Da    PI: 4.8548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914622.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
   XP_010914622.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.51.9e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
   XP_010914622.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139215.6E-131070No hitNo description
CDDcd001672.81E-121053No hitNo description
SuperFamilySSF466897.91E-2133108IPR009057Homeodomain-like
CDDcd116595.19E-3155106No hitNo description
Gene3DG3DSA:1.10.10.604.1E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118318.6E-59407656IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPSDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRAP PGFYDVSGEE RPVEQPKFPT  240
TIEELEGKRR VDIEAQLRKQ DIARNKIAQR QDAPAAILQA NKLNDPEAVR KRSKLMLPAP  300
QISDQELEEI AKMGYANDLV LANEELAEGS GATHALLANY SQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREIQTPNP MATPLATPGA  420
TGLTPRIGMT PSRDAYSFGA TPKGTPFRDE LHINEDMEMQ DSAKLELRRQ AELKKTLRSG  480
LTNLPQPKNE YQIVIQPIAE ENEETEEKIE EDMSDRIARE KAQEQARLEA LLRKRSKVLQ  540
RELPRPPAAS LELIRNSLIR GDEDKSSFVP PTLFEQADEM ISKELLALLE HDNAKYPLDG  600
KQEKEKKKYA KRVANGRAMP VPEIEDFDED ELKEADSLIK EEVEFLRVAM GHENEAFDDF  660
VKARDACQED LMYFPARDSY GLASIAGSSE KLAALQNEFE IMKKRMDDEA KKATRLEQKV  720
KLLTQGYQTR AGKLWSQIEA TYKQMDTAAT ELECFKALQK QEHLAASFRV SSLMEEVNKQ  780
KVLEQSLQQR YGDLLTEHDR IQRLLEEHKV QLRIREEIAA KNRALEEEIA ARNRALEEEA  840
AAKHGTLDEK LAENNQHGDT AQLGDVCRPD AGLDQTDLPN ADHPETTSSC EQPIPSVPGG  900
QLYAEGSAER KDAFEGQSTQ SANVIQESLN GNKEHVSVVD KNAELSGGVA GFVNEQKEMV  960
GSMVDAPAPV QDQIGSLQEQ QTTVANSGGQ VAGSPVIQPN ISEPTMDPSA SSDSAAQITA  1020
CLSNQITVSY STGLETMVVD SGDEGMDGGL AGCSNISMQV VFPVESGNAD PGSAEQIAGD  1080
SSSHGVVTSA PCSEEKIHSD FSIRTAVNSA DCALNNSDGG IASETNVSIP DYRENLMVES  1140
DDKAEMGDGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028023799Cell division cycle 5-like protein
5xjc_L0.028023799Cell division cycle 5-like protein
5yzg_L0.028023799Cell division cycle 5-like protein
5z56_L0.028023799Cell division cycle 5-like protein
5z57_L0.028023799Cell division cycle 5-like protein
5z58_L0.028023799Cell division cycle 5-like protein
6ff4_L0.028023799Cell division cycle 5-like protein
6ff7_L0.028023799Cell division cycle 5-like protein
6icz_L0.028023799Cell division cycle 5-like protein
6id0_L0.028023799Cell division cycle 5-like protein
6id1_L0.028023799Cell division cycle 5-like protein
6qdv_O0.028023799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914622.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2H3YP330.0A0A2H3YP33_PHODC; cell division cycle 5-like protein
STRINGXP_008801722.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]