PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010914568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 28609.8 Da PI: 6.4196 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 52 | 110 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+ XP_010914568.1 52 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDSSVLIITYTSDHNHP 110 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-30 | 45 | 112 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-25 | 50 | 112 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-35 | 51 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.353 | 52 | 112 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 53 | 110 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MDGSPPTEHI LKFQESKMDN SVSKKRKAVQ KTAITFRIEA DAGKQKSECP PSDFWSWRKY 60 GQKPIKGSPY PRGYYRCSTS KGCSAKKQVE RSKTDSSVLI ITYTSDHNHP GPHLPSISPN 120 EPFLQSQSIN QDCSTPKSPS QPHPTNEESL NKEKFPIPSP PKCSQEISST LQNPPTEVEG 180 HYHQLNILFD EGDPLSHPHP NSMTFSSTVP NTNEENDFFN ELEELPIPSS ITSFVRESFL 240 DERILFLPSE TIFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-23 | 52 | 112 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 7e-23 | 52 | 112 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914568.1 | 0.0 | probable WRKY transcription factor 14 | ||||
TrEMBL | A0A2H3ZEA2 | 1e-148 | A0A2H3ZEA2_PHODC; probable WRKY transcription factor 14 | ||||
STRING | XP_008812523.1 | 1e-149 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14912 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58710.2 | 2e-35 | WRKY DNA-binding protein 69 |