PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35445.5 Da PI: 6.1922 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grW++eEdell +++k +G g+W++ ++ g+ R++k+c++rw +yl XP_010914540.1 14 KGRWSAEEDELLMKYIKAHGEGSWRSLPKNAGLPRCGKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.7e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e ++++ lG++ W+ Ia++++ gRt++++k++w+++l XP_010914540.1 67 RGNITQEEEETIIKLRSSLGNR-WSVIAKHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.815 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.201 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.78E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWSAE EDELLMKYIK AHGEGSWRSL PKNAGLPRCG KSCRLRWVNY 60 LKTDLKRGNI TQEEEETIIK LRSSLGNRWS VIAKHLPGRT DNEIKNYWNS HLSRKIHSFH 120 DADGTRVIVG LTTIGSSGGK QKGGRTRRSA MKIGTTCWSK RKGNHERNGE HPISFVHDRE 180 GESMVCNLDH DKRSSTELVN LDEGVVFESG LIDFNEQMSP SLFVDSGFCT NNEIEGGLFG 240 ASHDSGTMNL SEERDAKDSI LNDDGEGVNP CSKEGREGEV VALDWEEMMC LEVDNFLNWE 300 GMWDGPREXV AMFMGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914540.2 | 0.0 | transcription factor MYB111 isoform X1 | ||||
TrEMBL | A0A2H3YDJ0 | 0.0 | A0A2H3YDJ0_PHODC; myb-related protein P | ||||
STRING | XP_008797192.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 4e-72 | myb domain protein 12 |