PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | SBP | ||||||||
Protein Properties | Length: 834aa MW: 92715.9 Da PI: 5.5326 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.4 | 3e-36 | 139 | 215 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCead+ e+k yh+rh+vC ++ ap+v+++g+ +r+CqqC++fh l++fDe+krsCrr+L++hn+rrr++ XP_010914362.1 139 RCQVPGCEADIGELKGYHQRHRVCLRCAYAPSVVLDGEPKRYCQQCGKFHILTDFDEGKRSCRRKLERHNKRRRRRP 215 6************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-29 | 136 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.368 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-34 | 138 | 218 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-27 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MENSDGVAGE GAEPGPAVTT TVTAALEWGG LLDFTIYDDG PLFLPWDGLE DRPQDDAAAA 60 APPPLPPPRA AGSVDRVRKR DVRLVCSNYL EGRIPCSCPE AEEAAGDEGE GAEVAVPGVE 120 SSKGKKRART GGPSIGPLRC QVPGCEADIG ELKGYHQRHR VCLRCAYAPS VVLDGEPKRY 180 CQQCGKFHIL TDFDEGKRSC RRKLERHNKR RRRRPTDLIN IVEEDKEHQG DISVDDNCAG 240 KPRKETIDGF ACGTVETAVS NKLRERETLL ESEDGHGSPF HSLSSFNNVH SNSIMSFTTS 300 DEAQIDEKID NSQSGLSTFC DNKSGYSSVC PTGRISFKLY DWNPADFPRR LRHQIFQWLA 360 SMPVELEGYI RPGCTMLTVF IAMPHFMWEK LSQDAAGYVK DLVCAPESLF LGRGNIHIYL 420 NNNIIQVLED ATLLNSIRME VQVPRLHYVF PTFFEAGKPM EFIACGSYLD QPKFRFLVSF 480 AGKYLSLESC HAMCHKKISE CSGNGVGSIS STEHEVFRIN ITQTDSEIFG PAFIEVENES 540 GISNFVPILF GNKHICSQLK RMHGAFSESL CADSSISQTI DTVANPGFCK ALVLKQNSIS 600 ELLLDIAWLL KEPRLEETET LLSSTNIHRL TCLLRFLIQN EAFIFLEEIL HFLDVIDWEG 660 LDDRVDKALD VDLRLFLNYM NHAREILHQR IPHDGKSELD IIDSISRASM PQSYAMNDGN 720 NAVPCLNQSM ERRDKDGSGS TTTPATQAND ETVPLLTRDG ISGQICRLNS GTRWTSESWG 780 IFPSTRTSIR AALFITGSVV LCFVACVALF HPHMAGEFAD SLRRLLLTSR KTWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-42 | 139 | 217 | 5 | 83 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 214 | KRSCRRKLERHNKRRRRRP |
2 | 200 | 212 | RRKLERHNKRRRR |
3 | 208 | 213 | KRRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914362.1 | 0.0 | squamosa promoter-binding-like protein 9 isoform X1 | ||||
TrEMBL | A0A2H3ZGT7 | 0.0 | A0A2H3ZGT7_PHODC; squamosa promoter-binding-like protein 9 isoform X1 | ||||
STRING | XP_008813644.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 1e-163 | squamosa promoter binding protein-like 7 |