PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914222.1 | ||||||||
Common Name | NTF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 221aa MW: 24722.1 Da PI: 6.2273 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.3 | 3.6e-56 | 74 | 178 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_010914222.1 74 QLQTFWATQmleIEHANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIFDFL 168 89*******8888********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprdelk XP_010914222.1 169 VDIVPRDELK 178 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.86E-34 | 62 | 168 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.0E-38 | 88 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-21 | 96 | 159 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEQSTQLSQT VMEVVTCAAQ TAYAAPSYQT AAMVAGTPAV IGAISPNIQT NPHHLAYQQI 60 QQLHHQQQQQ QHQQLQTFWA TQMLEIEHAN DFKNHSLPLA RIKKIMKADE DVRMISAEAP 120 VIFAKACEMF ILELTLRSWM HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPRDELKEE 180 GFGIARAGLP AIGGPANSMP YYYVPQQQPV TGAGGDHQEA R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-58 | 81 | 174 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 152 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306836.1 | 1e-165 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q655V5 | 3e-87 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A060ID37 | 1e-164 | A0A060ID37_ELAGV; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_008807972.1 | 1e-135 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-76 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105039680 |
Publications ? help Back to Top | |||
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