PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27883.7 Da    PI: 7.3241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914213.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.6e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvtfskRr g+lKKA+EL +LCd++v v+ifss+gk++eyss
  XP_010914213.1  9 KRIENPTNRQVTFSKRRGGLLKKANELAILCDVQVGVVIFSSSGKMFEYSS 59
                    79***********************************************96 PP

2K-box79.39.3e-2774169498
           K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++++  e  ++++   e++++++e+++Lq + R++ GedL+s+++++L+qLeqqLe s++k+R++K++ll +q+++l++ke+ l+++n  L + 
  XP_010914213.1  74 VTNTRfEEIDNQQQIFCEISRMRNENDMLQASMRQYTGEDLSSMTMNDLNQLEQQLEYSVNKVRTRKHQLLNQQLDNLRRKEHILEDQNSHLYRI 168
                     55556566678899999*************************************************************************99876 PP

           K-box  98 l 98 
                     l
  XP_010914213.1 169 L 169
                     5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
CDDcd002659.38E-44272No hitNo description
SuperFamilySSF554556.41E-33279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2681167IPR002487Transcription factor, K-box
PROSITE profilePS5129716.1985175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KANELAILCD VQVGVVIFSS SGKMFEYSSP  60
PLSMHQIIDR YQRVTNTRFE EIDNQQQIFC EISRMRNEND MLQASMRQYT GEDLSSMTMN  120
DLNQLEQQLE YSVNKVRTRK HQLLNQQLDN LRRKEHILED QNSHLYRILS EHQAAMEHQQ  180
AAMEHKVPDV PMLEPFGLFY QDEPSRNLLQ LSPQLHAFRL QPAQPNLQEA SLPGHSLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19171169MEF2 CHIMERA
6byy_B4e-19171169MEF2 CHIMERA
6byy_C4e-19171169MEF2 CHIMERA
6byy_D4e-19171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914210.11e-177MADS-box protein AeAP3-2 isoform X1
RefseqXP_010914214.11e-177MADS-box protein AeAP3-2 isoform X2
SwissprotQ6H7111e-104MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLA0A2H3Z3T11e-164A0A2H3Z3T1_PHODC; MADS-box protein AeAP3-2-like
STRINGXP_008807981.11e-165(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-46MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li M,Sun P,Zhou H,Chen S,Yu S
    Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).
    Theor. Appl. Genet., 2011. 123(3): p. 411-20
    [PMID:21512773]
  3. Yin LL,Xue HW
    The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development.
    Plant Cell, 2012. 24(3): p. 1049-65
    [PMID:22408076]
  4. Yang X, et al.
    Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).
    PLoS ONE, 2012. 7(12): p. e51435
    [PMID:23251532]
  5. Nayar S,Sharma R,Tyagi AK,Kapoor S
    Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.
    J. Exp. Bot., 2013. 64(14): p. 4239-53
    [PMID:23929654]
  6. Nayar S,Kapoor M,Kapoor S
    Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
    J. Exp. Bot., 2014. 65(18): p. 5339-50
    [PMID:25096923]
  7. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]