PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010914213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27883.7 Da PI: 7.3241 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.3 | 3.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL +LCd++v v+ifss+gk++eyss XP_010914213.1 9 KRIENPTNRQVTFSKRRGGLLKKANELAILCDVQVGVVIFSSSGKMFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 79.3 | 9.3e-27 | 74 | 169 | 4 | 98 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ e ++++ e++++++e+++Lq + R++ GedL+s+++++L+qLeqqLe s++k+R++K++ll +q+++l++ke+ l+++n L + XP_010914213.1 74 VTNTRfEEIDNQQQIFCEISRMRNENDMLQASMRQYTGEDLSSMTMNDLNQLEQQLEYSVNKVRTRKHQLLNQQLDNLRRKEHILEDQNSHLYRI 168 55556566678899999*************************************************************************99876 PP K-box 98 l 98 l XP_010914213.1 169 L 169 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.637 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.38E-44 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-33 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-26 | 81 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.19 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KANELAILCD VQVGVVIFSS SGKMFEYSSP 60 PLSMHQIIDR YQRVTNTRFE EIDNQQQIFC EISRMRNEND MLQASMRQYT GEDLSSMTMN 120 DLNQLEQQLE YSVNKVRTRK HQLLNQQLDN LRRKEHILED QNSHLYRILS EHQAAMEHQQ 180 AAMEHKVPDV PMLEPFGLFY QDEPSRNLLQ LSPQLHAFRL QPAQPNLQEA SLPGHSLQL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-19 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-19 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-19 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-19 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914210.1 | 1e-177 | MADS-box protein AeAP3-2 isoform X1 | ||||
Refseq | XP_010914214.1 | 1e-177 | MADS-box protein AeAP3-2 isoform X2 | ||||
Swissprot | Q6H711 | 1e-104 | MAD29_ORYSJ; MADS-box transcription factor 29 | ||||
TrEMBL | A0A2H3Z3T1 | 1e-164 | A0A2H3Z3T1_PHODC; MADS-box protein AeAP3-2-like | ||||
STRING | XP_008807981.1 | 1e-165 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-46 | MIKC_MADS family protein |