PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914124.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 320aa    MW: 36407.9 Da    PI: 7.454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914124.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.6e-123880246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g ++++Ed+++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_010914124.1 38 GGFSEQEDQIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 80
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-111744IPR009057Homeodomain-like
SuperFamilySSF466891.18E-201786IPR009057Homeodomain-like
PROSITE profilePS500904.0771831IPR017877Myb-like domain
PROSITE profilePS5129421.1173286IPR017930Myb domain
SMARTSM007171.2E-103684IPR001005SANT/Myb domain
PfamPF002491.9E-103880IPR001005SANT/Myb domain
CDDcd001678.71E-84082No hitNo description
Gene3DG3DSA:1.10.10.605.7E-184583IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKSYTTFFFP YPGKGLKRCG KSCRLRWLNY LRPNIKHGGF SEQEDQIICS LYISIGSRWS  60
IIAAQLPGRT DNDIKNYWNT RLKKKLLGKR RDSPPSRRLS INQDTNEETN RISPDTSSQA  120
LSTSALERMQ LHMQLQGLYN PFSFYNNPAL WPKFHPLRDK VFPIQQTDAN TIAATPVQQA  180
SDATMIEPSG QNLLPVKPNM PNPMNAYMHE DLNRSTLGFP SPSSSRTLSM DNSNPNFNAA  240
AVGLQDELHD LLYGKNECFG RQEEQQQTAL DCFKDMNGDK ESMNWWATNG FDDKSLAGTW  300
DFASNLQPDL LQEYGLGYDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1918622108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914123.10.0transcription factor MYB36-like
TrEMBLA0A2H3X4870.0A0A2H3X487_PHODC; transcription factor MYB36-like
STRINGXP_008778085.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-61myb domain protein 36