PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914103.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 350aa    MW: 38151 Da    PI: 8.0427
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914103.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-074071436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ ++  ++ l+C+ ++ +lC +C    H g
  XP_010914103.1 40 KPCDSCKASPALLYCRADSAYLCGTCDARVH-G 71
                    67*************************9999.4 PP
2zf-B_box26.51.3e-0882124339
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                      + C+ +e+ +++  C+ +   lC++C   +H++      H++
  XP_010914103.1  82 VWLCEVCEQAPASVTCKADAAALCDTCDADIHSSnplahrHER 124
                     579*****************************77999944554 PP
3CCT68.22.2e-23275319145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     Rea+++RY+eKrk+R+FeK+irY+sRKa+A+ RpR+KGrF+k+ae
  XP_010914103.1 275 REARVMRYREKRKSRRFEKTIRYASRKAYADARPRIKGRFAKRAE 319
                     9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9683784IPR000315B-box-type zinc finger
SMARTSM003365.7E-133784IPR000315B-box-type zinc finger
PfamPF006436.1E-64071IPR000315B-box-type zinc finger
CDDcd000217.02E-84184No hitNo description
PROSITE profilePS5011910.2180127IPR000315B-box-type zinc finger
PfamPF006432.5E-682126IPR000315B-box-type zinc finger
CDDcd000211.43E-883127No hitNo description
SMARTSM003361.5E-685127IPR000315B-box-type zinc finger
PROSITE profilePS5101716.857275317IPR010402CCT domain
PfamPF062031.5E-17275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MERHHIRRTN KIIRTGEKRG SGMKREAAGE KRAYGGMAAK PCDSCKASPA LLYCRADSAY  60
LCGTCDARVH GANLLASRHG RVWLCEVCEQ APASVTCKAD AAALCDTCDA DIHSSNPLAH  120
RHERLPVVPF LGLATAAGGE FLTPRPSADE ESVSWLFPDP DPEESMEALE LGSADFFFSD  180
ADPYLDLDYS VYSMSLDTGF DRKDGIKPIA GGPLLASDGY FDPDFARPKS FYGRSTKRSL  240
TRSASSSEVA VVPDESATAA DASARSGNPT VQMEREARVM RYREKRKSRR FEKTIRYASR  300
KAYADARPRI KGRFAKRAEV EAKVGRIYSS AADAVAAFLV DPCDGVVPSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914103.10.0zinc finger protein CONSTANS-LIKE 3
RefseqXP_029118702.10.0zinc finger protein CONSTANS-LIKE 3
RefseqXP_029118703.10.0zinc finger protein CONSTANS-LIKE 3
RefseqXP_029118704.10.0zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A2H3YXS11e-161A0A2H3YXS1_PHODC; zinc finger protein CONSTANS-LIKE 4-like
STRINGXP_008805435.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.14e-70CONSTANS-like 3