PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913905.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 696aa    MW: 75354.4 Da    PI: 10.7451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913905.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081451433
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........T CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........k 33
                     W t E++ll++av ++G+++W+++a ++         +
   XP_010913905.1 14 WGTLEELLLACAVSRHGTRRWDSVAMEVRsrspsahhL 51
                     9999*************************555555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.15E-41448No hitNo description
PfamPF002495.6E-71446IPR001005SANT/Myb domain
SMARTSM002973.5E-4112424IPR001487Bromodomain
SuperFamilySSF473703.66E-10325435IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.3E-9328440IPR001487Bromodomain
PfamPF004396.0E-6328408IPR001487Bromodomain
CDDcd043691.66E-8335419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MVRSGDPEAT SEIWGTLEEL LLACAVSRHG TRRWDSVAME VRSRSPSAHH LLLTPEGCNE  60
RYRHLERRFS ASDGKIGGGG GGPGLEIPWL EELRKLRVAE LRREVQRHDV SILSLQLKVK  120
KLQEEREQSL LEGDDGKRRP DLKEKEGRKN RESPGSTPGN IPGNRISGDS GRSCEESNST  180
DPKDVEEKPR VGLEEAEAAP GAETKSADQA MGGDVKSAGE ASYNGSSDTI AKAAVVANTA  240
RPLPLGDSGE SMAESKGGEP EAEREGAKET SDVQSSASLS RRQRRRRRRG GRTKGFSGCS  300
SGGDEPEADA VSPGGERVAA ESPPLITFVE FIRAHKFGSV FERRLESQSV RYRSMIRRHV  360
DLEMVRAELE GRGGRKAYTR AEVFRDLLLL CYNAIVFYPK SSPESIAAVH LRGLVTKEMA  420
KTIRKPARPP KPEEPAPPAQ PFPPPPVSKL QSDPDRASEP LEKQTPLVPL TACRKRSSLS  480
GKAAAAAGWK EGKEENEKHR VDRKEREEDE TLTTKRTKEG FSVSRPRGLR SNKTPGNGGN  540
RVNGVSKSPN SISSPRIKST AVENSTEATA KSAKKNGGGE AVSASKKKGA AEFLIRMKRS  600
SPTSNGKLRN TLRSSASSGA GGGKGGEQQK KGGRGDGRKD RDSRRSSKRA AENSAPVKRS  660
VGRPPKRAAA PPPPPPAKKA KDELGRTPPS RNRARR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285RRQRRR
2280287RRQRRRRR
3280288RRQRRRRRR
4281288RQRRRRRR
5282288QRRRRRR
6283291RRRRRRGGR
7628644QKKGGRGDGRKDRDSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913905.10.0serine/arginine repetitive matrix protein 1 isoform X2
TrEMBLA0A2H3YYN80.0A0A2H3YYN8_PHODC; serine/arginine repetitive matrix protein 1
STRINGXP_008805472.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.17e-65DNA-binding bromodomain-containing protein