PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913905.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 696aa MW: 75354.4 Da PI: 10.7451 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 14 | 51 | 4 | 33 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........T CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........k 33 W t E++ll++av ++G+++W+++a ++ + XP_010913905.1 14 WGTLEELLLACAVSRHGTRRWDSVAMEVRsrspsahhL 51 9999*************************555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.15E-4 | 14 | 48 | No hit | No description |
Pfam | PF00249 | 5.6E-7 | 14 | 46 | IPR001005 | SANT/Myb domain |
SMART | SM00297 | 3.5E-4 | 112 | 424 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 3.66E-10 | 325 | 435 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 2.3E-9 | 328 | 440 | IPR001487 | Bromodomain |
Pfam | PF00439 | 6.0E-6 | 328 | 408 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.66E-8 | 335 | 419 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MVRSGDPEAT SEIWGTLEEL LLACAVSRHG TRRWDSVAME VRSRSPSAHH LLLTPEGCNE 60 RYRHLERRFS ASDGKIGGGG GGPGLEIPWL EELRKLRVAE LRREVQRHDV SILSLQLKVK 120 KLQEEREQSL LEGDDGKRRP DLKEKEGRKN RESPGSTPGN IPGNRISGDS GRSCEESNST 180 DPKDVEEKPR VGLEEAEAAP GAETKSADQA MGGDVKSAGE ASYNGSSDTI AKAAVVANTA 240 RPLPLGDSGE SMAESKGGEP EAEREGAKET SDVQSSASLS RRQRRRRRRG GRTKGFSGCS 300 SGGDEPEADA VSPGGERVAA ESPPLITFVE FIRAHKFGSV FERRLESQSV RYRSMIRRHV 360 DLEMVRAELE GRGGRKAYTR AEVFRDLLLL CYNAIVFYPK SSPESIAAVH LRGLVTKEMA 420 KTIRKPARPP KPEEPAPPAQ PFPPPPVSKL QSDPDRASEP LEKQTPLVPL TACRKRSSLS 480 GKAAAAAGWK EGKEENEKHR VDRKEREEDE TLTTKRTKEG FSVSRPRGLR SNKTPGNGGN 540 RVNGVSKSPN SISSPRIKST AVENSTEATA KSAKKNGGGE AVSASKKKGA AEFLIRMKRS 600 SPTSNGKLRN TLRSSASSGA GGGKGGEQQK KGGRGDGRKD RDSRRSSKRA AENSAPVKRS 660 VGRPPKRAAA PPPPPPAKKA KDELGRTPPS RNRARR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 280 | 285 | RRQRRR |
2 | 280 | 287 | RRQRRRRR |
3 | 280 | 288 | RRQRRRRRR |
4 | 281 | 288 | RQRRRRRR |
5 | 282 | 288 | QRRRRRR |
6 | 283 | 291 | RRRRRRGGR |
7 | 628 | 644 | QKKGGRGDGRKDRDSRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913905.1 | 0.0 | serine/arginine repetitive matrix protein 1 isoform X2 | ||||
TrEMBL | A0A2H3YYN8 | 0.0 | A0A2H3YYN8_PHODC; serine/arginine repetitive matrix protein 1 | ||||
STRING | XP_008805472.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57980.1 | 7e-65 | DNA-binding bromodomain-containing protein |