PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913904.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 697aa    MW: 75482.6 Da    PI: 10.7593
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913904.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081451433
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........T CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........k 33
                     W t E++ll++av ++G+++W+++a ++         +
   XP_010913904.1 14 WGTLEELLLACAVSRHGTRRWDSVAMEVRsrspsahhL 51
                     9999*************************555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.20E-41448No hitNo description
PfamPF002495.6E-71446IPR001005SANT/Myb domain
SMARTSM002971.8E-4112425IPR001487Bromodomain
SuperFamilySSF473703.27E-11324436IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.7E-10327441IPR001487Bromodomain
PfamPF004391.4E-6328409IPR001487Bromodomain
CDDcd043695.00E-9335420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MVRSGDPEAT SEIWGTLEEL LLACAVSRHG TRRWDSVAME VRSRSPSAHH LLLTPEGCNE  60
RYRHLERRFS ASDGKIGGGG GGPGLEIPWL EELRKLRVAE LRREVQRHDV SILSLQLKVK  120
KLQEEREQSL LEGDDGKRRP DLKEKEGRKN RESPGSTPGN IPGNRISGDS GRSCEESNST  180
DPKDVEEKPR VGLEEAEAAP GAETKSADQA MGGDVKSAGE ASYNGSSDTI AKAAVVANTA  240
RPLPLGDSGE SMAESKGGEP EAEREGAKET SDVQSSASLS RRQRRRRRRG GRTKGFSGCS  300
SGGDEPEADA VSPGGERVAA ESPPLITFVE FIRAHKFGSV FERRLESQKS VRYRSMIRRH  360
VDLEMVRAEL EGRGGRKAYT RAEVFRDLLL LCYNAIVFYP KSSPESIAAV HLRGLVTKEM  420
AKTIRKPARP PKPEEPAPPA QPFPPPPVSK LQSDPDRASE PLEKQTPLVP LTACRKRSSL  480
SGKAAAAAGW KEGKEENEKH RVDRKEREED ETLTTKRTKE GFSVSRPRGL RSNKTPGNGG  540
NRVNGVSKSP NSISSPRIKS TAVENSTEAT AKSAKKNGGG EAVSASKKKG AAEFLIRMKR  600
SSPTSNGKLR NTLRSSASSG AGGGKGGEQQ KKGGRGDGRK DRDSRRSSKR AAENSAPVKR  660
SVGRPPKRAA APPPPPPAKK AKDELGRTPP SRNRARR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285RRQRRR
2280287RRQRRRRR
3280288RRQRRRRRR
4281288RQRRRRRR
5282288QRRRRRR
6283291RRRRRRGGR
7629645QKKGGRGDGRKDRDSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913904.10.0serine/arginine repetitive matrix protein 1 isoform X1
TrEMBLA0A2H3YYN80.0A0A2H3YYN8_PHODC; serine/arginine repetitive matrix protein 1
STRINGXP_008805472.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-66DNA-binding bromodomain-containing protein