PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 26702.1 Da PI: 7.7365 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 92 | 146 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeql+ Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_010913846.1 92 RKKLRLTKEQLTLLENSFQEHNTLNSTQKQALADQLNLRSRQVEVWFQNRRARTK 146 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.4e-38 | 92 | 180 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+e+++L++++K++la +L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL++e eeL++ XP_010913846.1 92 RKKLRLTKEQLTLLENSFQEHNTLNSTQKQALADQLNLRSRQVEVWFQNRRARTKLKQTEVDCEFLKKCCENLSNENRRLKRELEELKS 180 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 81 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 88 | 148 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-19 | 88 | 151 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-15 | 90 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-14 | 92 | 149 | No hit | No description |
Pfam | PF00046 | 6.6E-17 | 92 | 146 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.3E-10 | 148 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.7E-19 | 148 | 191 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEGDECNISL GLAIGGGGLF SSNQSRNNGR KPPVQFHVLF PPQPKGEEEE EEPITEEQHV 60 NKSRSRSKNI DEEEDTSTKD MSDGVSNQVG MRKKLRLTKE QLTLLENSFQ EHNTLNSTQK 120 QALADQLNLR SRQVEVWFQN RRARTKLKQT EVDCEFLKKC CENLSNENRR LKRELEELKS 180 MKPGCPFYVG IPKVATLNLC PSCERTVAAG SEKGNGDLDA MKSQRVPLKN GLVGLQN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913846.1 | 1e-174 | homeobox-leucine zipper protein HAT9-like | ||||
Swissprot | P46665 | 2e-52 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A3Q0I4S7 | 1e-107 | A0A3Q0I4S7_PHODC; homeobox-leucine zipper protein HAT9-like | ||||
STRING | XP_008789723.1 | 1e-103 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-43 | homeobox from Arabidopsis thaliana |