PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913807.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 708aa    MW: 82039.3 Da    PI: 5.9491
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913807.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.6e-2471157290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y++++GFsvrk k+++   +++i +++++Cskeg +++e     +++ +++ trtgCka+++ + +++g+w+vtk++ eHnH+la
  XP_010913807.1  71 LYRDYGHRMGFSVRKGKQYYWIGTKKIRTKDYYCSKEGLKNDEYLG--ESSFNKPDTRTGCKAMIRFTVDEEGQWKVTKMVDEHNHDLA 157
                     7****************************************99887..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-2171157IPR004330FAR1 DNA binding domain
PfamPF105511.7E-34279373IPR018289MULE transposase domain
PROSITE profilePS5096610.262560596IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-7561593IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-5571598IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDSSEYGDRS CGSHREIICL DNVGEGEAIR ANSNGEEADK HEESSDVLGH EEVTKELLGQ  60
VVNSEEEAYN LYRDYGHRMG FSVRKGKQYY WIGTKKIRTK DYYCSKEGLK NDEYLGESSF  120
NKPDTRTGCK AMIRFTVDEE GQWKVTKMVD EHNHDLAKPE ERHLLRSMRS LIAGKASVLD  180
SMGNAGIRMV STYSYMVEES SGAENLEFTK QNCEDYINKH KLMLIEAKDS QSLVKHFKHR  240
ANQEGMFYWD VQLNQEGRPC NFFWRDGRSR VDYDCFGDVV VFDTTYRTDK YNLICAPFVG  300
VNHHRQNVMF GCAFLFDETT TSFIWLFKSF LESMDDRPPK TIFTDQDHAM ANAIAEVFPN  360
TQHCLCLWHI YKNAPSHLSS LNSDQNFHEL FDKCQGCDYE EEFEETWGKM ISEYDAQDNK  420
WLNNLYKFRR KWCTAFNKDT FDGGIKSSQK SDLTDSVLNA IADKSTSLTK FVVALEKLVN  480
GWRRDESKED FCCNQSAPTC IVEHSEILKH ASKVFTHKIY KLFEEEYLDG CGATSLCKEI  540
LLCATSYKFE LMMQRSSKVW TVLLDTSTME ISCSCGKFER MGLLCSHVLK AFIIKNVQRI  600
PERYILKRWT KDARKRVYRL NEEGPSKKKG TKVELVYHNQ AMRYAYNLVM KSQGHEGARK  660
ILWDTFDLGD AKLEKFFDRL SLDAHSTVKS NQANDYDEAE MVDDDDEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913807.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_029118644.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3XCK00.0A0A2H3XCK0_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008781698.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5