PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913626.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 363aa    MW: 39103.8 Da    PI: 6.1155
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913626.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.91e-081758338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                    +r+C+ ++  ++ lfC+ ++ +lC +C +  H g       H+
  XP_010913626.1 17 ARRCDSCKGSPALLFCRADSAYLCGTCDSRVH-GanklasrHE 58
                    689***************************99.4466666676 PP
2zf-B_box27.75.7e-0960105342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_010913626.1  60 VWMCEVCEQAPASVTCKADAAALCVTCDADIHSAnplarrHERVPV 105
                     689*****************************66899999999986 PP
3CCT69.68e-24290333144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010913626.1 290 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 333
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3811562IPR000315B-box-type zinc finger
SMARTSM003361.0E-141562IPR000315B-box-type zinc finger
CDDcd000219.16E-91862No hitNo description
PfamPF006435.3E-71859IPR000315B-box-type zinc finger
PROSITE profilePS5011910.97858105IPR000315B-box-type zinc finger
PfamPF006434.4E-760105IPR000315B-box-type zinc finger
CDDcd000211.55E-961105No hitNo description
SMARTSM003361.9E-1063105IPR000315B-box-type zinc finger
PfamPF062037.1E-18290332IPR010402CCT domain
PROSITE profilePS5101716.906290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASEMERAKG GFWGFAARRC DSCKGSPALL FCRADSAYLC GTCDSRVHGA NKLASRHERV  60
WMCEVCEQAP ASVTCKADAA ALCVTCDADI HSANPLARRH ERVPVVPFLE PVATALKSAG  120
GGEGFLFKGV DDCDEEENEA EEAEAASWLL PSPTPPNPNP KGGMLEAPEL KTADYFFSDV  180
DPYLDLDYAS SMDARFHQTD SVVPVQAKTV GGPPPPPLLA PDGGLDLDFT QSKPSYSSYT  240
AHSLSHSVSS SEVGVVPDGR YGGGGGAMAD VTNPYGSGGR AGNPAAQMDR EARVMRYREK  300
RKNRRFEKTI RYASRKAYAE TRPRIKGRFA KRTEIEAEVD RIYSAAAAAA FMVDHGYGVV  360
PSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913626.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T94e-98COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2H3XD840.0A0A2H3XD84_PHODC; zinc finger protein CONSTANS-LIKE 4-like
STRINGXP_008782090.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-83CONSTANS-like 5