PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 560aa MW: 59234.8 Da PI: 7.8941 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.8 | 1e-09 | 169 | 193 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tC +G++CkF H+ XP_010913397.1 169 GEKDCAHYMLTRTCTFGNSCKFDHP 193 7889********************8 PP | |||||||
2 | zf-CCCH | 39.8 | 7.4e-13 | 239 | 263 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+f+a+tG Ck+G++CkF+H++ XP_010913397.1 239 EPLCSFYAKTGKCKFGPNCKFHHPK 263 79*********************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.1e-12 | 317 | 342 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_010913397.1 317 PGEADCPFYLKTGSCKYGATCRYNHP 342 57899********************9 PP | |||||||
4 | zf-CCCH | 31.7 | 2.7e-10 | 457 | 476 | 7 | 26 |
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 +++++tG Ck+G+rCkF+H+ XP_010913397.1 457 HYYMKTGLCKFGERCKFHHP 476 59*****************8 PP | |||||||
5 | zf-CCCH | 38.9 | 1.5e-12 | 508 | 531 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tGtCk+G +CkF H+p XP_010913397.1 508 VICSFYLKTGTCKFGTTCKFDHPP 531 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.699 | 167 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.018 | 167 | 194 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-5 | 168 | 194 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 169 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-7 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.69 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 239 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 239 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-7 | 241 | 268 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-7 | 316 | 343 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 316 | 344 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-10 | 318 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 320 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 322 | 341 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.43 | 454 | 477 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 457 | 476 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-5 | 457 | 479 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.652 | 457 | 478 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 458 | 476 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 504 | 531 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 504 | 532 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 508 | 531 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 508 | 531 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 509 | 529 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MSNQIYNYSS SYGGGGGTSS FYSLRATNPY LSDGGSSRLS SVDSLAAADT GMYSDRMSSL 60 YSKSGDGSLR LSGSDIAGYG AAGSLSAAGK IGGGIGTAPA SRALFASSSL DPMVVGGAKR 120 SVEALYNQSI LGSHNTIGQS DAPFSSNSLV KRSRLETASN LPIYPQRPGE KDCAHYMLTR 180 TCTFGNSCKF DHPIWVPEGG IPDWKEIPLV PASESLPEKP GEPDCPGTEN SVLPERPSEP 240 LCSFYAKTGK CKFGPNCKFH HPKDLKIPPD GEDTDKMGEM ESEKNDGSAG GDPKLAKAHV 300 SITPALLHNS KGLPIRPGEA DCPFYLKTGS CKYGATCRYN HPDRNSFNPP LASALGQAIM 360 PSPATNLPFG VLDPAASFLQ NINLQSAQAS LGVIPTVYPQ RPGEIECDVR IDSILFVLGL 420 LTASRAHLTL GPITRVAKNA SLYTVSLSLM LASFYSHYYM KTGLCKFGER CKFHHPIDRS 480 APMSDAKQAP QQNVKLTLAG LPRREGAVIC SFYLKTGTCK FGTTCKFDHP PPGEAIAMAT 540 SQGTGSGTGT GVFSTESGEN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913389.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-158 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2H3Y0M1 | 0.0 | A0A2H3Y0M1_PHODC; zinc finger CCCH domain-containing protein 8-like | ||||
STRING | XP_008798450.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-146 | floral homeotic protein (HUA1) |